Yuan He

According to our database, Yuan He authored at least 46 papers between 2020 and 2026.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2026

EigentSearch-Q+: Enhancing Deep Research Agents with Structured Reasoning Tools.

Boer Zhang, Mingyan Wu, Dongzhuoran Zhou, Yuqicheng Zhu, Wendong Fan, Puzhen Zhang, Zifeng Ding, Guohao Li, Yuan He

CoRR, April, 2026

What Breaks Knowledge Graph based RAG? Benchmarking and Empirical Insights into Reasoning under Incomplete Knowledge.

Dongzhuoran Zhou, Yuqicheng Zhu, Xiaxia Wang, Hongkuan Zhou, Yuan He, Jiaoyan Chen, Steffen Staab, Evgeny Kharlamov

Proceedings of the 19th Conference of the European Chapter of the Association for Computational Linguistics, 2026

2025

GR-Agent: Adaptive Graph Reasoning Agent under Incomplete Knowledge.

Dongzhuoran Zhou, Yuqicheng Zhu, Xiaxia Wang, Hongkuan Zhou, Jiaoyan Chen, Steffen Staab, Yuan He, Evgeny Kharlamov

CoRR, December, 2025

Self-Exploring Language Models for Explainable Link Forecasting on Temporal Graphs via Reinforcement Learning.

Zifeng Ding, Shenyang Huang, Zeyu Cao, Emma Kondrup, Zachary Yang, Xingyue Huang, Yuan Sui, Zhangdie Yuan, Yuqicheng Zhu, Xianglong Hu, Yuan He, Farimah Poursafaei, Michael M. Bronstein, Andreas Vlachos

CoRR, September, 2025

What Breaks Knowledge Graph based RAG? Empirical Insights into Reasoning under Incomplete Knowledge.

Dongzhuoran Zhou, Yuqicheng Zhu, Xiaxia Wang, Hongkuan Zhou, Yuan He, Jiaoyan Chen, Steffen Staab, Evgeny Kharlamov

CoRR, August, 2025

Ontology Embedding: A Survey of Methods, Applications and Resources.

Jiaoyan Chen, Olga Mashkova, Fernando Zhapa-Camacho, Robert Hoehndorf, Yuan He, Ian Horrocks

IEEE Trans. Knowl. Data Eng., July, 2025

FactProbe: Supposedly Equivalent Facts That Aren't? Entity Frequency in Pre-training Induces Asymmetry in LLMs.

Yuan He, Bailan He, Zifeng Ding, Alisia Maria Lupidi, Yuqicheng Zhu, Shuo Chen, Caiqi Zhang, Jiaoyan Chen, Yunpu Ma, Volker Tresp, Ian Horrocks

Dataset, July, 2025

Distilling Tool Knowledge into Language Models via Back-Translated Traces.

Xingyue Huang, Xianglong Hu, Zifeng Ding, Yuan He, Rishabh, Waleed Alzarooni, Ziyu Ye, Wendong Fan, Bailan He, Haige Bo, Changran Hu, Guohao Li

CoRR, June, 2025

Evaluating Knowledge Graph Based Retrieval Augmented Generation Methods under Knowledge Incompleteness.

Dongzhuoran Zhou, Yuqicheng Zhu, Yuan He, Jiaoyan Chen, Evgeny Kharlamov, Steffen Staab

CoRR, April, 2025

Supposedly Equivalent Facts That Aren't? Entity Frequency in Pre-training Induces Asymmetry in LLMs.

Yuan He, Bailan He, Zifeng Ding, Alisia Maria Lupidi, Yuqicheng Zhu, Shuo Chen, Caiqi Zhang, Jiaoyan Chen, Yunpu Ma, Volker Tresp, Ian Horrocks

CoRR, March, 2025

DyGMamba: Efficiently Modeling Long-Term Temporal Dependency on Continuous-Time Dynamic Graphs with State Space Models.

Zifeng Ding, Yifeng Li, Yuan He, Antonio Norelli, Jingcheng Wu, Volker Tresp, Michael M. Bronstein, Yunpu Ma

Trans. Mach. Learn. Res., 2025

Language Models as Ontology Encoders.

Hui Yang, Jiaoyan Chen, Yuan He, Yongsheng Gao, Ian Horrocks

Proceedings of the Semantic Web - ISWC 2025, 2025

ArgRAG: Explainable Retrieval Augmented Generation using Quantitative Bipolar Argumentation.

Yuqicheng Zhu, Nico Potyka, Daniel Hernández, Yuan He, Zifeng Ding, Bo Xiong, Dongzhuoran Zhou, Evgeny Kharlamov, Steffen Staab

Proceedings of The 19th International Conference on Neurosymbolic Learning and Reasoning (NeSy 2025), 2025

Evaluation of Language Models in Knowledge Engineering (ELMKE) Workshop.

Bohui Zhang, Reham Alharbi, Yuan He

Proceedings of the Joint Proceedings of the ESWC 2025 Workshops and Tutorials co-located with 22nd Extended Semantic Web Conference (ESWC 2025), 2025

Predicate-Conditional Conformalized Answer Sets for Knowledge Graph Embeddings.

Yuqicheng Zhu, Daniel Hernández, Yuan He, Zifeng Ding, Bo Xiong, Evgeny Kharlamov, Steffen Staab

Proceedings of the Findings of the Association for Computational Linguistics, 2025

2024

Datasets for the Hierarchy Transformer Encoders (HiTs).

Yuan He, Zhangdie Yuan, Jiaoyan Chen, Ian Horrocks

Dataset, September, 2024

Bio-ML: Machine Learning-Friendly Biomedical Datasets for Equivalence and Subsumption Ontology Matching.

Yuan He, Jiaoyan Chen, Hang Dong, Ernesto Jiménez-Ruiz, Ali Hadian, Ian Horrocks

Dataset, July, 2024

Datasets for the Hierarchy Transformer Encoders (HiTs).

Yuan He, Zhangdie Yuan, Jiaoyan Chen, Ian Horrocks

Dataset, January, 2024

DeepOnto: A Python package for ontology engineering with deep learning.

Yuan He, Jiaoyan Chen, Hang Dong, Ian Horrocks, Carlo Allocca, Taehun Kim, Brahmananda Sapkota

Semantic Web, 2024

Language Models as Hierarchy Encoders.

Yuan He, Zhangdie Yuan, Jiaoyan Chen, Ian Horrocks

CoRR, 2024

Results of the Ontology Alignment Evaluation Initiative 2024.

Mina Abd Nikooie Pour, Alsayed Algergawy, Eva Blomqvist, Patrice Buche, Jiaoyan Chen, Adrien Coulet, Julien Cufi, Hang Dong, Daniel Faria, Lucas Ferraz, Pedro Giesteira Cotovio, Yuan He, Sven Hertling, Ian Horrocks, Liliana Ibanescu, Sarika Jain, Ernesto Jiménez-Ruiz, Naouel Karam, Felix Kraus, Patrick Lambrix, Huanyu Li, Ying Li, Pierre Monnin, Heiko Paulheim, Catia Pesquita, Abhisek Sharma, Pavel Shvaiko, Marta Contreiras Silva, Guilherme Sousa, Cássia Trojahn, Jana Vatascinová, Beyza Yaman, Ondrej Zamazal, Lu Zhou

Proceedings of the 19th International Workshop on Ontology Matching co-located with the 23rd International Semantic Web Conference (ISWC 2024), 2024

Language Models as Hierarchy Encoders.

Yuan He, Moy Yuan, Jiaoyan Chen, Ian Horrocks

Proceedings of the Advances in Neural Information Processing Systems 37: Annual Conference on Neural Information Processing Systems 2024, 2024

A Language Model Based Framework for New Concept Placement in Ontologies.

Hang Dong, Jiaoyan Chen, Yuan He, Yongsheng Gao, Ian Horrocks

Proceedings of the Semantic Web - 21st International Conference, 2024

2023

Ontology Enrichment from Texts (OET): A Biomedical Dataset for Concept Discovery and Placement.

Hang Dong, Jiaoyan Chen, Yuan He, Ian Horrocks

Dataset, December, 2023

Contextual semantic embeddings for ontology subsumption prediction.

Jiaoyan Chen, Yuan He, Yuxia Geng, Ernesto Jiménez-Ruiz, Hang Dong, Ian Horrocks

World Wide Web (WWW), September, 2023

Datasets for Out-of-KB Mention Discovery with Entity Linking.

Hang Dong, Jiaoyan Chen, Yuan He, Yinan Liu, Ian Horrocks

Dataset, August, 2023

Ontology Enrichment from Texts (OET): A Biomedical Dataset for Concept Discovery and Placement.

Hang Dong, Jiaoyan Chen, Yuan He, Ian Horrocks

Dataset, August, 2023

Bio-ML: Machine Learning-Friendly Biomedical Datasets for Equivalence and Subsumption Ontology Matching.

Yuan He, Jiaoyan Chen, Hang Dong, Ernesto Jiménez-Ruiz, Ali Hadian, Ian Horrocks

Dataset, July, 2023

Zero-Shot and Few-Shot Learning With Knowledge Graphs: A Comprehensive Survey.

Jiaoyan Chen, Yuxia Geng, Zhuo Chen, Jeff Z. Pan, Yuan He, Wen Zhang, Ian Horrocks, Huajun Chen

Proc. IEEE, June, 2023

Ontology Enrichment from Texts (OET): A Biomedical Dataset for Concept Discovery and Placement.

Hang Dong, Jiaoyan Chen, Yuan He, Ian Horrocks

Dataset, June, 2023

Ontology Enrichment from Texts (OET): A Biomedical Dataset for Concept Discovery and Placement.

Hang Dong, Jiaoyan Chen, Yuan He, Ian Horrocks

Dataset, June, 2023

OntoLAMA: LAnguage Model Analysis for Ontology Subsumption Inference.

Yuan He, Jiaoyan Chen, Ernesto Jiménez-Ruiz, Hang Dong, Ian Horrocks

Dataset, March, 2023

Exploring Large Language Models for Ontology Alignment.

Yuan He, Jiaoyan Chen, Hang Dong, Ian Horrocks

Proceedings of the ISWC 2023 Posters, 2023

Results of the Ontology Alignment Evaluation Initiative 2023.

Mina Abd Nikooie Pour, Alsayed Algergawy, Patrice Buche, Leyla Jael Castro, Jiaoyan Chen, Adrien Coulet, Julien Cufi, Hang Dong, Omaima Fallatah, Daniel Faria, Irini Fundulaki, Sven Hertling, Yuan He, Ian Horrocks, Martin Huschka, Liliana Ibanescu, Sarika Jain, Ernesto Jiménez-Ruiz, Naouel Karam, Patrick Lambrix, Huanyu Li, Ying Li, Pierre Monnin, Engy Nasr, Heiko Paulheim, Catia Pesquita, Tzanina Saveta, Pavel Shvaiko, Guilherme Sousa, Cássia Trojahn, Jana Vatascinová, Mingfang Wu, Beyza Yaman, Ondrej Zamazal, Lu Zhou

Proceedings of the 18th International Workshop on Ontology Matching co-located with the 22nd International Semantic Web Conference (ISWC 2023), 2023

Reveal the Unknown: Out-of-Knowledge-Base Mention Discovery with Entity Linking.

Hang Dong, Jiaoyan Chen, Yuan He, Yinan Liu, Ian Horrocks

Proceedings of the 32nd ACM International Conference on Information and Knowledge Management, 2023

Ontology Enrichment from Texts: A Biomedical Dataset for Concept Discovery and Placement.

Hang Dong, Jiaoyan Chen, Yuan He, Ian Horrocks

Proceedings of the 32nd ACM International Conference on Information and Knowledge Management, 2023

Language Model Analysis for Ontology Subsumption Inference.

Yuan He, Jiaoyan Chen, Ernesto Jiménez-Ruiz, Hang Dong, Ian Horrocks

Proceedings of the Findings of the Association for Computational Linguistics: ACL 2023, 2023

2022

Machine Learning-Friendly Biomedical Datasets for Equivalence and Subsumption Ontology Matching.

Yuan He, Jiaoyan Chen, Hang Dong, Ernesto Jiménez-Ruiz, Ali Hadian, Ian Horrocks

Dataset, July, 2022

Machine Learning-Friendly Biomedical Datasets for Equivalence and Subsumption Ontology Matching.

Yuan He, Jiaoyan Chen, Hang Dong, Ernesto Jiménez-Ruiz, Ali Hadian, Ian Horrocks

Dataset, July, 2022

Contextual Semantic Embeddings for Ontology Subsumption Prediction.

Jiaoyan Chen, Yuan He, Ernesto Jiménez-Ruiz, Hang Dong, Ian Horrocks

CoRR, 2022

Results of the Ontology Alignment Evaluation Initiative 2022.

Mina Abd Nikooie Pour, Alsayed Algergawy, Patrice Buche, Leyla Jael Castro, Jiaoyan Chen, Hang Dong, Omaima Fallatah, Daniel Faria, Irini Fundulaki, Sven Hertling, Yuan He, Ian Horrocks, Martin Huschka, Liliana Ibanescu, Ernesto Jiménez-Ruiz, Naouel Karam, Amir Laadhar, Patrick Lambrix, Huanyu Li, Ying Li, Franck Michel, Engy Nasr, Heiko Paulheim, Catia Pesquita, Tzanina Saveta, Pavel Shvaiko, Cássia Trojahn, Chantelle Verhey, Mingfang Wu, Beyza Yaman, Ondrej Zamazal, Lu Zhou

Proceedings of the 17th International Workshop on Ontology Matching (OM 2022) co-located with the 21th International Semantic Web Conference (ISWC 2022), 2022

Machine Learning-Friendly Biomedical Datasets for Equivalence and Subsumption Ontology Matching.

Yuan He, Jiaoyan Chen, Hang Dong, Ernesto Jiménez-Ruiz, Ali Hadian, Ian Horrocks

Proceedings of the Semantic Web - ISWC 2022, 2022

BERTMap: A BERT-Based Ontology Alignment System.

Yuan He, Jiaoyan Chen, Denvar Antonyrajah, Ian Horrocks

Proceedings of the Thirty-Sixth AAAI Conference on Artificial Intelligence, 2022

2021

Low-resource Learning with Knowledge Graphs: A Comprehensive Survey.

Jiaoyan Chen, Yuxia Geng, Zhuo Chen, Jeff Z. Pan, Yuan He, Wen Zhang, Ian Horrocks, Huajun Chen

CoRR, 2021

Biomedical ontology alignment with BERT.

Yuan He, Jiaoyan Chen, Denvar Antonyrajah, Ian Horrocks

Proceedings of the 16th International Workshop on Ontology Matching co-located with the 20th International Semantic Web Conference (ISWC 2021), 2021

2020

English-to-Chinese Transliteration with Phonetic Auxiliary Task.

Yuan He, Shay B. Cohen

Proceedings of the 1st Conference of the Asia-Pacific Chapter of the Association for Computational Linguistics and the 10th International Joint Conference on Natural Language Processing, 2020