Yuko Okamoto

According to our database1, Yuko Okamoto authored at least 19 papers between 1993 and 2019.

Collaborative distances:
  • Dijkstra number2 of five.
  • Erdős number3 of four.

Timeline

Legend:

Book 
In proceedings 
Article 
PhD thesis 
Other 

Links

On csauthors.net:

Bibliography

2019
Enhanced sampling method in molecular simulations using genetic algorithm for biomolecular systems.
Journal of Computational Chemistry, 2019

2018
Implementation of replica-exchange umbrella sampling in GAMESS.
Computer Physics Communications, 2018

2017
Conformational changes of ubiquitin under high pressure conditions: A pressure simulated tempering molecular dynamics study.
Journal of Computational Chemistry, 2017

2016
Implementation of replica-exchange umbrella sampling in the DFTB+ semiempirical quantum chemistry package.
Computer Physics Communications, 2016

2015
Deterministic replica-exchange method without pseudo random numbers for simulations of complex systems.
Computer Physics Communications, 2015

Designed-walk replica-exchange method for simulations of complex systems.
Computer Physics Communications, 2015

2013
Two-dimensional replica-exchange method for predicting protein-ligand binding structures.
Journal of Computational Chemistry, 2013

2011
Protein structure predictions by parallel simulated annealing molecular dynamics using genetic crossover.
Journal of Computational Chemistry, 2011

Ab Initio prediction of protein-ligand binding structures by replica-exchange umbrella sampling simulations.
Journal of Computational Chemistry, 2011

New Conformational Search Method Using Genetic Algorithm and Knot Theory for Proteins.
Proceedings of the Biocomputing 2011: Proceedings of the Pacific Symposium, 2011

2010
Dependency of ligand free energy landscapes on charge parameters and solvent models.
Journal of Computer-Aided Molecular Design, 2010

2009
Monte-Carlo Simulated Annealing in Protein Folding.
Proceedings of the Encyclopedia of Optimization, Second Edition, 2009

2006
Multibaric-multithermal ensemble molecular dynamics simulations.
Journal of Computational Chemistry, 2006

2005
Molecular simulations in the multibaric-multithermal ensembles.
Computer Physics Communications, 2005

2004
Mega Process Genetic Algorithm Using Grid MP.
Proceedings of the Grid Computing in Life Science, 2004

1998
Calculation of solvation free energy using RISM theory for peptide in salt solution.
Journal of Computational Chemistry, 1998

1997
Calculation of hydration free energy for a solute with many atomic sites using the RISM theory: A robust and efficient algorithm.
Journal of Computational Chemistry, 1997

Numerical comparisons of three recently proposed algorithms in the protein folding problem.
Journal of Computational Chemistry, 1997

1993
Prediction of peptide conformation by multicanonical algorithm: New approach to the multiple-minima problem.
Journal of Computational Chemistry, 1993


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