Zhixiang Ren

CoRR, March, 2025

A quantitative analysis of knowledge-learning preferences in large language models in molecular science.

[BibT_eX]

[DOI]

Nat. Mac. Intell., 2025

Aligning sequence and structure representations leveraging protein domains for function prediction.

[BibT_eX]

[DOI]

Mingqing Wang

Zhiwei Nie

Yonghong He

Athanasios V. Vasilakos

Expert Syst. Appl., 2025

Deep learning methods for protein representation and function prediction: A comprehensive overview.

[BibT_eX]

[DOI]

Mingqing Wang

Zhiwei Nie

Yonghong He

Athanasios V. Vasilakos

Qiang Shawn Cheng

Eng. Appl. Artif. Intell., 2025

A self-feedback knowledge elicitation approach for chemical reaction predictions.

[BibT_eX]

[DOI]

Eng. Appl. Artif. Intell., 2025

Predicting protein stability changes upon mutations with dual-view ensemble learning from single sequence.

[BibT_eX]

[DOI]

Briefings Bioinform., 2025

Generative prediction of real-world prevalent SARS-CoV-2 mutation with <i>in silico</i> virus evolution.

[BibT_eX]

[DOI]

Briefings Bioinform., 2025

Deep learning in single-cell and spatial transcriptomics data analysis: advances and challenges from a data science perspective.

[BibT_eX]

[DOI]

Briefings Bioinform., 2025

2024

3D-Mol: A Novel Contrastive Learning Framework for Molecular Property Prediction with 3D Information.

[BibT_eX]

[DOI]

Taojie Kuang

Yiming Ren

Pattern Anal. Appl., September, 2024

WaveFormer: transformer-based denoising method for gravitational-wave data.

[BibT_eX]

[DOI]

Mach. Learn. Sci. Technol., March, 2024

GWAI: Artificial intelligence platform for enhanced gravitational wave data analysis.

[BibT_eX]

[DOI]

SoftwareX, 2024

ProtFAD: Introducing function-aware domains as implicit modality towards protein function perception.

[BibT_eX]

[DOI]

CoRR, 2024

Scientific Language Modeling: A Quantitative Review of Large Language Models in Molecular Science.

[BibT_eX]

[DOI]

CoRR, 2024

GIT-Mol: A multi-modal large language model for molecular science with graph, image, and text.

[BibT_eX]

[DOI]

Comput. Biol. Medicine, 2024

Cytokine expression patterns: A single-cell RNA sequencing and machine learning based roadmap for cancer classification.

[BibT_eX]

[DOI]

Comput. Biol. Chem., 2024

Impact of Domain Knowledge and Multi-Modality on Intelligent Molecular Property Prediction: A Systematic Survey.

[BibT_eX]

[DOI]

Taojie Kuang

Big Data Min. Anal., 2024

CELA-MFP: a contrast-enhanced and label-adaptive framework for multi-functional therapeutic peptides prediction.

[BibT_eX]

[DOI]

Briefings Bioinform., 2024

Self-supervised learning on millions of primary RNA sequences from 72 vertebrates improves sequence-based RNA splicing prediction.

[BibT_eX]

[DOI]

Briefings Bioinform., 2024

Dynamic Knowledge-Prior for Few-Shot Drug-Drug Interaction Events Prediction.

[BibT_eX]

[DOI]

Proceedings of the 15th ACM International Conference on Bioinformatics, 2024

Distilling Multi-Modal Genomic Knowledge for Drug Response Prediction.

[BibT_eX]

[DOI]

Proceedings of the 15th ACM International Conference on Bioinformatics, 2024

2023

DeepProSite: structure-aware protein binding site prediction using ESMFold and pretrained language model.

[BibT_eX]

[DOI]

Bioinform., December, 2023

Running ahead of evolution - AI-based simulation for predicting future high-risk SARS-CoV-2 variants.

[BibT_eX]

[DOI]

Int. J. High Perform. Comput. Appl., November, 2023

Compact Binary Systems Waveform Generation with Generative Pre-trained Transformer.

[BibT_eX]

[DOI]

CoRR, 2023

DECODE: DilatEd COnvolutional neural network for Detecting Extreme-mass-ratio inspirals.

[BibT_eX]

[DOI]

CoRR, 2023

GIT-Mol: A Multi-modal Large Language Model for Molecular Science with Graph, Image, and Text.

[BibT_eX]

[DOI]

Yiming Ren

CoRR, 2023

2022

MLGWSC-1: The first Machine Learning Gravitational-Wave Search Mock Data Challenge.

[BibT_eX]

[DOI]

CoRR, 2022

Space-based gravitational wave signal detection and extraction with deep neural network.

[BibT_eX]

[DOI]

CoRR, 2022

Sampling with prior knowledge for high-dimensional gravitational wave data analysis.

[BibT_eX]

[DOI]

Big Data Min. Anal., 2022

2021

AIPerf: Automated machine learning as an AI-HPC benchmark.

[BibT_eX]

[DOI]

Big Data Min. Anal., 2021

2014

Concurrent Single-Label Image Classification and Annotation via Efficient Multi-Layer Group Sparse Coding.

[BibT_eX]

[DOI]

IEEE Trans. Multim., 2014

Region-Based Saliency Detection and Its Application in Object Recognition.

[BibT_eX]

[DOI]

IEEE Trans. Circuits Syst. Video Technol., 2014

2013

Exploring effective data representation for saliency detection in image and video

[BibT_eX]

[DOI]

PhD thesis, 2013

Regularized Feature Reconstruction for Spatio-Temporal Saliency Detection.

[BibT_eX]

[DOI]

IEEE Trans. Image Process., 2013

Background subtraction via coherent trajectory decomposition.

[BibT_eX]

[DOI]

Proceedings of the ACM Multimedia Conference, 2013

2012

Video saliency detection with robust temporal alignment and local-global spatial contrast.

[BibT_eX]

[DOI]