Dongqing Wei
This page is a disambiguation page, it actually contains mutiple papers from persons of the same or a similar name.
Bibliography
2024
Immunoinformatics-driven In silico vaccine design for Nipah virus (NPV): Integrating machine learning and computational epitope prediction.
Comput. Biol. Medicine, March, 2024
STGIC: A graph and image convolution-based method for spatial transcriptomic clustering.
PLoS Comput. Biol., February, 2024
Omicron variant (B.1.1.529) challenge the integrity of blood brain barrier: Evidence from protein structural analysis.
Comput. Biol. Medicine, February, 2024
2023
J. Chem. Inf. Model., December, 2023
DeepProSite: structure-aware protein binding site prediction using ESMFold and pretrained language model.
Bioinform., December, 2023
Running ahead of evolution - AI-based simulation for predicting future high-risk SARS-CoV-2 variants.
Int. J. High Perform. Comput. Appl., November, 2023
Inhibition of cMYC-MAX transcription factors hetero-dimerization with structurally engineered omoMYC to downregulate oncogenic pathways in renal carcinoma.
Comput. Biol. Medicine, September, 2023
Proteomics-based vaccine targets annotation and design of subunit and mRNA-based vaccines for Monkeypox virus (MPXV) against the recent outbreak.
Comput. Biol. Medicine, June, 2023
Structure-based design of promising natural products to inhibit thymidylate kinase from Monkeypox virus and validation using free energy calculations.
Comput. Biol. Medicine, May, 2023
Subtype-DCC: decoupled contrastive clustering method for cancer subtype identification based on multi-omics data.
Briefings Bioinform., March, 2023
More or less deadly? A mathematical model that predicts SARS-CoV-2 evolutionary direction.
Comput. Biol. Medicine, February, 2023
AFP-MFL: accurate identification of antifungal peptides using multi-view feature learning.
Briefings Bioinform., January, 2023
AdaPPI: identification of novel protein functional modules via adaptive graph convolution networks in a protein-protein interaction network.
Briefings Bioinform., January, 2023
ESOMIR: a curated database of biomarker genes and miRNAs associated with esophageal cancer.
Database J. Biol. Databases Curation, 2023
A Novel Deep Learning Approach Featuring Graph-Based Algorithm for Cell Segmentation and Tracking.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2023
2022
A transformer-based model to predict peptide-HLA class I binding and optimize mutated peptides for vaccine design.
Nat. Mach. Intell., 2022
MDDI-SCL: predicting multi-type drug-drug interactions via supervised contrastive learning.
J. Cheminformatics, 2022
Screening of immune epitope in the proteome of the Dabie bandavirus, SFTS, to design a protein-specific and proteome-wide vaccine for immune response instigation using an immunoinformatics approaches.
Comput. Biol. Medicine, 2022
Comparative mutational analysis of SARS-CoV-2 isolates from Pakistan and structural-functional implications using computational modelling and simulation approaches.
Comput. Biol. Medicine, 2022
Evaluation and identification of essential therapeutic proteins and vaccinomics approach towards multi-epitopes vaccine designing against <i>Legionella pneumophila</i> for immune response instigation.
Comput. Biol. Medicine, 2022
Investigation of the binding and dynamic features of A.30 variant revealed higher binding of RBD for hACE2 and escapes the neutralizing antibody: A molecular simulation approach.
Comput. Biol. Medicine, 2022
Discovering potent inhibitors against the Mpro of the SARS-CoV-2. A medicinal chemistry approach.
Comput. Biol. Medicine, 2022
DeepPSE: Prediction of polypharmacy side effects by fusing deep representation of drug pairs and attention mechanism.
Comput. Biol. Medicine, 2022
Subtractive proteomics assisted therapeutic targets mining and designing ensemble vaccine against <i>Candida auris</i> for immune response induction.
Comput. Biol. Medicine, 2022
A protein coupling and molecular simulation analysis of the clinical mutants of androgen receptor revealed a higher binding for Leupaxin, to increase the prostate cancer invasion and motility.
Comput. Biol. Medicine, 2022
Computational modelling of potentially emerging SARS-CoV-2 spike protein RBDs mutations with higher binding affinity towards ACE2: A structural modelling study.
Comput. Biol. Medicine, 2022
Abrogation of SARS-CoV-2 interaction with host (NRP1) neuropilin-1 receptor through high-affinity marine natural compounds to curtail the infectivity: A structural-dynamics data.
Comput. Biol. Medicine, 2022
Structure-guided design of multi-epitopes vaccine against variants of concern (VOCs) of SARS-CoV-2 and validation through In silico cloning and immune simulations.
Comput. Biol. Medicine, 2022
Crystal structure of Acetyl-CoA carboxylase (AccB) from <i>Streptomyces antibioticus</i> and insights into the substrate-binding through <i>in silico mutagenesis</i> and biophysical investigations.
Comput. Biol. Medicine, 2022
SVPath: an accurate pipeline for predicting the pathogenicity of human exon structural variants.
Briefings Bioinform., 2022
MDF-SA-DDI: predicting drug-drug interaction events based on multi-source drug fusion, multi-source feature fusion and transformer self-attention mechanism.
Briefings Bioinform., 2022
Identifying the kind behind SMILES - anatomical therapeutic chemical classification using structure-only representations.
Briefings Bioinform., 2022
ConformerDTI: Local Features Coupling Global Representations for Drug-Target Interaction Prediction.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022
2021
LUNAR : Drug Screening for Novel Coronavirus Based on Representation Learning Graph Convolutional Network.
IEEE ACM Trans. Comput. Biol. Bioinform., 2021
IEEE ACM Trans. Comput. Biol. Bioinform., 2021
IEEE ACM Trans. Comput. Biol. Bioinform., 2021
Bringing Structural Implications and Deep Learning-Based Drug Identification for KRAS Mutants.
J. Chem. Inf. Model., 2021
Genome-wide screening of vaccine targets prioritization and reverse vaccinology aided design of peptides vaccine to enforce humoral immune response against <i>Campylobacter jejuni</i>.
Comput. Biol. Medicine, 2021
Bioinformatics analysis of the differences in the binding profile of the wild-type and mutants of the SARS-CoV-2 spike protein variants with the ACE2 receptor.
Comput. Biol. Medicine, 2021
Structural probing of HapR to identify potent phytochemicals to control <i>Vibrio cholera</i> through integrated computational approaches.
Comput. Biol. Medicine, 2021
Immunogenomics guided design of immunomodulatory multi-epitope subunit vaccine against the SARS-CoV-2 new variants, and its validation through <i>in silico</i> cloning and immune simulation.
Comput. Biol. Medicine, 2021
Comput. Biol. Medicine, 2021
MDA-CF: Predicting MiRNA-Disease associations based on a cascade forest model by fusing multi-source information.
Comput. Biol. Medicine, 2021
MMV-db: vaccinomics and RNA-based therapeutics database for infectious hemorrhagic fever-causing mammarenaviruses.
Database J. Biol. Databases Curation, 2021
Database J. Biol. Databases Curation, 2021
MLCDForest: multi-label classification with deep forest in disease prediction for long non-coding RNAs.
Briefings Bioinform., 2021
Irinotecan and vandetanib create synergies for treatment of pancreatic cancer patients with concomitant TP53 and KRAS mutations.
Briefings Bioinform., 2021
Exosomal ncRNAs profiling of mycobacterial infection identified miRNA-185-5p as a novel biomarker for tuberculosis.
Briefings Bioinform., 2021
NeuroPpred-Fuse: an interpretable stacking model for prediction of neuropeptides by fusing sequence information and feature selection methods.
Briefings Bioinform., 2021
MDA-GCNFTG: identifying miRNA-disease associations based on graph convolutional networks via graph sampling through the feature and topology graph.
Briefings Bioinform., 2021
DTI-MLCD: predicting drug-target interactions using multi-label learning with community detection method.
Briefings Bioinform., 2021
DTI-CDF: a cascade deep forest model towards the prediction of drug-target interactions based on hybrid features.
Briefings Bioinform., 2021
Prediction of Blood-Brain Barrier Permeability of Compounds by Fusing Resampling Strategies and eXtreme Gradient Boosting.
IEEE Access, 2021
iEnhancer-DHF: Identification of Enhancers and Their Strengths Using Optimize Deep Neural Network With Multiple Features Extraction Methods.
IEEE Access, 2021
A Static Analysis of Wnt/β-Catenin and Wnt/Ca<sup>2+</sup> Biological Regulatory Networks for ARVC Using Automata Network Model.
IEEE Access, 2021
CFCN: A Multi-scale Fully Convolutional Network with Dilated Convolution for Nuclei Classification and Localization.
Proceedings of the Bioinformatics Research and Applications - 17th International Symposium, 2021
Mining Cancer Cell Line-Based Drugs to Benefit KRAS<sup>(G12D)</sup> Pancreatic Adenocarcinoma Patients.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021
2020
High-Scalable Collaborated Parallel Framework for Large-Scale Molecular Dynamic Simulation on Tianhe-2 Supercomputer.
IEEE ACM Trans. Comput. Biol. Bioinform., 2020
Nucleic Acids Res., 2020
LMI-DForest: A deep forest model towards the prediction of lncRNA-miRNA interactions.
Comput. Biol. Chem., 2020
Proceedings of the 22nd IEEE International Conference on E-health Networking, 2020
2019
Prediction of CYP450 Enzyme-Substrate Selectivity Based on the Network-Based Label Space Division Method.
J. Chem. Inf. Model., 2019
J. Chem. Inf. Model., 2019
Insights into the Mechanisms of the Pyrazinamide Resistance of Three Pyrazinamidase Mutants N11K, P69T, and D126N.
J. Chem. Inf. Model., 2019
Immunomics Datasets and Tools: To Identify Potential Epitope Segments for Designing Chimeric Vaccine Candidate to Cervix Papilloma.
Data, 2019
2018
Identification of target gene and prognostic evaluation for lung adenocarcinoma using gene expression meta-analysis, network analysis and neural network algorithms.
J. Biomed. Informatics, 2018
Identification of novel drug targets for diamond-blackfan anemia based on RPS19 gene mutation using protein-protein interaction network.
BMC Syst. Biol., 2018
dbAMEPNI: a database of alanine mutagenic effects for protein-nucleic acid interactions.
Database J. Biol. Databases Curation, 2018
2017
Inhibition of β-Amyloid Channels with a Drug Candidate wgx-50 Revealed by Molecular Dynamics Simulations.
J. Chem. Inf. Model., November, 2017
SynBioEcoli: a comprehensive metabolism network of engineered E. coli in three dimensional visualization.
Quant. Biol., 2017
2016
mAMBER: A CPU/MIC collaborated parallel framework for AMBER on Tianhe-2 supercomputer.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2016
2015
Comput. Biol. Medicine, 2015
2013
J. Chem. Inf. Model., 2013
2012
Adaptive Visual and Auditory Map Alignment in Barn Owl Superior Colliculus and Its Neuromorphic Implementation.
IEEE Trans. Neural Networks Learn. Syst., 2012
J. Chem. Inf. Model., 2012
2011
Long-Range Effects of a Peripheral Mutation on the Enzymatic Activity of Cytochrome P450 1A2.
J. Chem. Inf. Model., 2011
A Negative Cooperativity Mechanism of Human CYP2E1 Inferred from Molecular Dynamics Simulations and Free Energy Calculations.
J. Chem. Inf. Model., 2011
2010
J. Chem. Inf. Model., 2010
The computational model to predict accurately inhibitory activity for inhibitors towardsCYP3A4.
Comput. Biol. Medicine, 2010
2005
2004
J. Chem. Inf. Model., 2004