Zilin Ren

According to our database, Zilin Ren authored at least 10 papers between 2022 and 2026.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2026

MuFaDDG: a sequence-based multiscale feature fusion framework for protein stability changes prediction.

Jianting Gong, Pengjia Ma, Zilin Ren, Si Li, Zhiguo Fu, Pingping Sun, Ming Ni, Xiaochen Bo

Bioinform., 2026

2025

PLMABFW: A deep learning framework for predicting Antibody-Antigen interactions using protein language model.

Yongbing Chen, Qianyi Jia, Xinyue Jia, Zhiguo Fu, Pingping Sun, Bo Li, Zilin Ren

J. Bioinform. Comput. Biol., December, 2025

DeepPFP: a multi-task-aware architecture for protein function prediction.

Han Wang, Zilin Ren, Jinghong Sun, Yongbing Chen, Xiaochen Bo, Jiguo Xue, Jingyang Gao, Ming Ni

Briefings Bioinform., January, 2025

PLMTox: Low-Rank Adaptation on Protein Language Models for Peptide Toxicity Prediction.

Xiaoqi Wang, Chen Liu, Wenjie Du, Lingyun Song, Zilin Ren, Xuequn Shang

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2025

2024

NASTRA: accurate analysis of short tandem repeat markers by nanopore sequencing with repeat-structure-aware algorithm.

Zilin Ren, Jiarong Zhang, Yixiang Zhang, Tingting Yang, Pingping Sun, Jiguo Xue, Xiaochen Bo, Bo Zhou, Jiangwei Yan, Ming Ni

Briefings Bioinform., November, 2024

CodonBERT: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.

Zilin Ren, Lili Jiang, Yaxin Di, Dufei Zhang, Jianli Gong, Jianting Gong, Qiwei Jiang, Zhiguo Fu, Pingping Sun, Bo Zhou, Ming Ni

Bioinform., 2024

2023

Model performance and interpretability of semi-supervised generative adversarial networks to predict oncogenic variants with unlabeled data.

Zilin Ren, Quan Li, Kajia Cao, Marilyn M. Li, Yunyun Zhou, Kai Wang

BMC Bioinform., December, 2023

THPLM: a sequence-based deep learning framework for protein stability changes prediction upon point variations using pretrained protein language model.

Jianting Gong, Lili Jiang, Yongbing Chen, Yixiang Zhang, Xue Li, Zhiqiang Ma, Zhiguo Fu, Fei He, Pingping Sun, Zilin Ren, Mingyao Tian

Bioinform., October, 2023

PLMTHP: An Ensemble Framework for Tumor Homing Peptide Prediction based on Protein Language Model.

Yongbing Chen, Han Qin, Xiaodan Cui, Tianhui Yang, Pingping Sun, Jianting Gong, Zilin Ren

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2023

2022

Correction: Model performance and interpretability of semi-supervised generative adversarial networks to predict oncogenic variants with unlabeled data.

Zilin Ren, Quan Li, Kajia Cao, Marilyn M. Li, Yunyun Zhou, Kai Wang

BMC Bioinform., March, 2022