Xiaochen Bo

According to our database1, Xiaochen Bo authored at least 33 papers between 2001 and 2018.

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Bibliography

2018
Deep Learning and Its Applications in Biomedicine.
Genomics, Proteomics & Bioinformatics, 2018

DTI-RCNN: New Efficient Hybrid Neural Network Model to Predict Drug-Target Interactions.
Proceedings of the Artificial Neural Networks and Machine Learning - ICANN 2018, 2018

Prediction of DTIs for high-dimensional and class-imbalanced data based on CGAN.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

paraSNF: An Parallel Approach for Large-Scale Similarity Network Fusion.
Proceedings of the Advanced Computer Architecture - 12th Conference, 2018

2017
3DSNP: a database for linking human noncoding SNPs to their three-dimensional interacting genes.
Nucleic Acids Research, 2017

NFPscanner: a webtool for knowledge-based deciphering of biomedical networks.
BMC Bioinformatics, 2017

BiRen: predicting enhancers with a deep-learning-based model using the DNA sequence alone.
Bioinformatics, 2017

Exploring spatially adjacent TFBS-clustered regions with Hi-C data.
Bioinformatics, 2017

Drug - target interaction prediction with a deep-learning-based model.
Proceedings of the 2017 IEEE International Conference on Bioinformatics and Biomedicine, 2017

2016
ICM: a web server for integrated clustering of multi-dimensional biomedical data.
Nucleic Acids Research, 2016

RevEcoR: an R package for the reverse ecology analysis of microbiomes.
BMC Bioinformatics, 2016

De novo identification of replication-timing domains in the human genome by deep learning.
Bioinformatics, 2016

2015
EHFPI: a database and analysis resource of essential host factors for pathogenic infection.
Nucleic Acids Research, 2015

New insights into the landscape relationships of host response to bacterial pathogens.
Proceedings of the 2015 International Joint Conference on Neural Networks, 2015

2014
ExpTreeDB: Web-based query and visualization of manually annotated gene expression profiling experiments of human and mouse from GEO.
Bioinformatics, 2014

Predicting drug side effects based on link prediction in bipartite network.
Proceedings of the 7th International Conference on Biomedical Engineering and Informatics, 2014

2013
Exploring the role of human miRNAs in virus-host interactions using systematic overlap analysis.
Bioinformatics, 2013

2011
Characterization the regulation of herpesvirus miRNAs from the view of human protein interaction network.
BMC Systems Biology, 2011

Topology aware functional similarity of protein interaction networks based on gene ontology.
Proceedings of the 33rd Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2011

2010
GOSemSim: an R package for measuring semantic similarity among GO terms and gene products.
Bioinformatics, 2010

PerturbationAnalyzer: a tool for investigating the effects of concentration perturbation on protein interaction networks.
Bioinformatics, 2010

2009
EvoRSR: an integrated system for exploring evolution of RNA structural robustness.
BMC Bioinformatics, 2009

Towards a Comprehensive HBV-Human Interaction Map.
Proceedings of the International Joint Conferences on Bioinformatics, 2009

Dynamic Propagation Properties of Virus-Host Protein Interaction Network.
Proceedings of the International Joint Conferences on Bioinformatics, 2009

Optimizing Reference Gene Set for Inter-Chip Normalization Using Genetic Algorithm.
Proceedings of the 2nd International Conference on BioMedical Engineering and Informatics, 2009

2008
A novel representation of RNA secondary structure based on element-contact graphs.
BMC Bioinformatics, 2008

2007
RSRE: RNA structural robustness evaluator.
Nucleic Acids Research, 2007

2006
AOBase: a database for antisense oligonucleotides selection and design.
Nucleic Acids Research, 2006

RDMAS: a web server for RNA deleterious mutation analysis.
BMC Bioinformatics, 2006

Selection of antisense oligonucleotides based on multiple predicted target mRNA structures.
BMC Bioinformatics, 2006

2005
TargetFinder: a software for antisense oligonucleotide target site selection based on MAST and secondary structures of target mRNA.
Bioinformatics, 2005

2001
Sign Correlation Detector for Blind Image Watermarking in the DCT Domain.
Proceedings of the Advances in Multimedia Information Processing, 2001

Evaluation of the Image Degradation for a Typical Watermarking Algorithm in the Block-DCT Domain.
Proceedings of the Information and Communications Security, Third International Conference, 2001


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