Alain Viari

According to our database, Alain Viari authored at least 22 papers between 1990 and 2012.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2012

The CanOE Strategy: Integrating Genomic and Metabolic Contexts across Multiple Prokaryote Genomes to Find Candidate Genes for Orphan Enzymes.

Adam Alexander Thil Smith, Eugeni Belda, Alain Viari, Claudine Médigue, David Vallenet

PLoS Comput. Biol., 2012

UniPathway: a resource for the exploration and annotation of metabolic pathways.

Anne Morgat, Eric Coissac, Elisabeth Coudert, Kristian B. Axelsen, Guillaume Keller, Amos Bairoch, Alan J. Bridge, Lydie Bougueleret, Ioannis Xenarios, Alain Viari

Nucleic Acids Res., 2012

2011

Bacterial syntenies: an exact approach with gene quorum.

Yves-Pol Deniélou, Marie-France Sagot, Frédéric Boyer, Alain Viari

BMC Bioinform., 2011

2009

Multiple Alignment of Biological Networks: A Flexible Approach.

Yves-Pol Deniélou, Frédéric Boyer, Alain Viari, Marie-France Sagot

Proceedings of the Combinatorial Pattern Matching, 20th Annual Symposium, 2009

2007

Repseek, a tool to retrieve approximate repeats from large DNA sequences.

Guillaume Achaz, Frédéric Boyer, Eduardo P. C. Rocha, Alain Viari, Eric Coissac

Bioinform., 2007

2006

GenoLink: a graph-based querying and browsing system for investigating the function of genes and proteins.

Patrick Durand, Laurent Labarre, Alain Meil, Jean-Louis Divol, Yves Vandenbrouck, Alain Viari, Jérôme Wojcik

BMC Bioinform., 2006

Genepi: a blackboard framework for genome annotation.

Stéphane Descorps-Declère, Danielle Ziébelin, François Rechenmann, Alain Viari

BMC Bioinform., 2006

Reconstruction of Switching Thresholds in Piecewise-Affine Models of Genetic Regulatory Networks.

Samuel Drulhe, Giancarlo Ferrari-Trecate, Hidde de Jong, Alain Viari

Proceedings of the Hybrid Systems: Computation and Control, 9th International Workshop, 2006

2005

Syntons, metabolons and interactons: an exact graph-theoretical approach for exploring neighbourhood between genomic and functional data.

Frédéric Boyer, Anne Morgat, Laurent Labarre, Joël Pothier, Alain Viari

Bioinform., 2005

2003

How Does Computer Science Change Molecular Biology?

Alain Viari

Proceedings of the STACS 2003, 20th Annual Symposium on Theoretical Aspects of Computer Science, Berlin, Germany, February 27, 2003

Ab initio reconstruction of metabolic pathways.

Frédéric Boyer, Alain Viari

Proceedings of the European Conference on Computational Biology (ECCB 2003), 2003

1999

Imagene: an integrated computer environment for sequence annotation and analysis.

Claudine Médigue, François Rechenmann, Antoine Danchin, Alain Viari

Bioinform., 1999

1998

Pairwide and Multiple Identification of Three-Dimensional Common Substructures in Proteins.

V. Escalier, Joël Pothier, Henry Soldano, Alain Viari

J. Comput. Biol., 1998

1997

Multiple Sequence Comparison - A Peptide Matching Approach.

Marie-France Sagot, Alain Viari, Henry Soldano

Theor. Comput. Sci., 1997

Flexible Identification of Structural Objects in Nucleic Acid Sequences: Palindromes, Mirror Repeats, Pseudoknots and Triple Helices.

Marie-France Sagot, Alain Viari

Proceedings of the Combinatorial Pattern Matching, 8th Annual Symposium, 1997

1996

A Double Combinatorial Approach to Discovering Patterns in Biological Sequences.

Marie-France Sagot, Alain Viari

Proceedings of the Combinatorial Pattern Matching, 7th Annual Symposium, 1996

1995

Searching for flexible repeated patterns using a non-transitive similarity relation.

Henry Soldano, Alain Viari, Marc Champesme

Pattern Recognit. Lett., 1995

Finding flexible patterns in a text: an application to three-dimensional molecular matching.

Marie-France Sagot, Alain Viari, Joël Pothier, Henry Soldano

Comput. Appl. Biosci., 1995

A Distance-Based Block Searching Algorithm.

Marie-France Sagot, Alain Viari, Henry Soldano

Proceedings of the Third International Conference on Intelligent Systems for Molecular Biology, 1995

Cooperative Computer System For Genome Sequence Analysis.

Claudine Médigue, Thierry Vermat, Gilles Bisson, Alain Viari, Antoine Danchin

Proceedings of the Third International Conference on Intelligent Systems for Molecular Biology, 1995

1991

'Multifrequency' location and clustering of sequence patterns from proteins.

E. Ollivier, Henry Soldano, Alain Viari

Comput. Appl. Biosci., 1991

1990

A scale-independent signal processing method for sequence analysis.

Alain Viari, Henry Soldano, E. Ollivier

Comput. Appl. Biosci., 1990