Marie-France Sagot
Affiliations:- INRIA, France
According to our database1,
Marie-France Sagot
authored at least 118 papers
between 1995 and 2023.
Collaborative distances:
Collaborative distances:
Timeline
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Online presence:
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on zbmath.org
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on id.loc.gov
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on d-nb.info
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on dl.acm.org
On csauthors.net:
Bibliography
2023
Algorithmica, October, 2023
2022
Algorithms Mol. Biol., 2022
2021
J. Graph Algorithms Appl., 2021
Making Sense of a Cophylogeny Output: Efficient Listing of Representative Reconciliations.
Proceedings of the 21st International Workshop on Algorithms in Bioinformatics, 2021
2020
Lazy listing of equivalence classes - A paper on dynamic programming and tropical circuits.
CoRR, 2020
MOMO - multi-objective metabolic mixed integer optimization: application to yeast strain engineering.
BMC Bioinform., 2020
Bioinform., 2020
Bioinform., 2020
Algorithms Mol. Biol., 2020
Proceedings of the Combinatorial Algorithms - 31st International Workshop, 2020
2019
Exploring the Robustness of the Parsimonious Reconciliation Method in Host-Symbiont Cophylogeny.
IEEE ACM Trans. Comput. Biol. Bioinform., 2019
2018
Theory Comput. Syst., 2018
Inf. Process. Lett., 2018
Algorithmic Enumeration: Output-sensitive, Input-Sensitive, Parameterized, Approximative (Dagstuhl Seminar 18421).
Dagstuhl Reports, 2018
2017
Playing hide and seek with repeats in local and global de novo transcriptome assembly of short RNA-seq reads.
Algorithms Mol. Biol., 2017
Proceedings of the Computational Intelligence Methods for Bioinformatics and Biostatistics, 2017
2016
ERCIM News, 2016
BMC Bioinform., 2016
Algorithms Mol. Biol., 2016
Proceedings of the 17th Italian Conference on Theoretical Computer Science, 2016
Proceedings of the Computer Science - Theory and Applications, 2016
Proceedings of the Algorithms for Computational Biology - Third International Conference, 2016
2015
Mirinho: An efficient and general plant and animal pre-miRNA predictor for genomic and deep sequencing data.
BMC Bioinform., 2015
A polynomial delay algorithm for the enumeration of bubbles with length constraints in directed graphs.
Algorithms Mol. Biol., 2015
Proceedings of the Fundamentals of Computation Theory - 20th International Symposium, 2015
2014
Telling metabolic stories to explore metabolomics data: a case study on the yeast response to cadmium exposure.
Bioinform., 2014
Proceedings of the Algorithms in Bioinformatics - 14th International Workshop, 2014
Proceedings of the Combinatorial Algorithms - 25th International Workshop, 2014
Proceedings of the Algorithms - ESA 2014, 2014
2013
Proceedings of the Experimental Algorithms, 12th International Symposium, 2013
A Polynomial Delay Algorithm for the Enumeration of Bubbles with Length Constraints in Directed Graphs and Its Application to the Detection of Alternative Splicing in RNA-seq Data.
Proceedings of the Algorithms in Bioinformatics - 13th International Workshop, 2013
2012
Telling stories: Enumerating maximal directed acyclic graphs with a constrained set of sources and targets.
Theor. Comput. Sci., 2012
BMC Bioinform., 2012
Navigating the unexplored seascape of pre-miRNA candidates in single-genome approaches.
Bioinform., 2012
Algorithms and complexity of enumerating minimal precursor sets in genome-wide metabolic networks.
Bioinform., 2012
Sampling solution traces for the problem of sorting permutations by signed reversals.
Algorithms Mol. Biol., 2012
Adv. Bioinformatics, 2012
Proceedings of the String Processing and Information Retrieval, 2012
Proceedings of the Combinatorial Optimization - Second International Symposium, 2012
2011
CycADS: an annotation database system to ease the development and update of BioCyc databases.
Database J. Biol. Databases Curation, 2011
Proceedings of the Prague Stringology Conference 2011, 2011
2010
Graph-Based Analysis of the Metabolic Exchanges between Two Co-Resident Intracellular Symbionts, <i>Baumannia cicadellinicola</i> and <i>Sulcia muelleri</i>, with Their Insect Host, <i>Homalodisca coagulata</i>.
PLoS Comput. Biol., 2010
MetExplore: a web server to link metabolomic experiments and genome-scale metabolic networks.
Nucleic Acids Res., 2010
Enumerating Chemical Organisations in Consistent Metabolic Networks: Complexity and Algorithms.
Proceedings of the Algorithms in Bioinformatics, 10th International Workshop, 2010
Proceedings of the String Processing and Information Retrieval, 2010
Proceedings of the Combinatorial Pattern Matching, 21st Annual Symposium, 2010
2009
IEEE ACM Trans. Comput. Biol. Bioinform., 2009
EURASIP J. Bioinform. Syst. Biol., 2009
Algorithms Mol. Biol., 2009
Algorithms Mol. Biol., 2009
Proceedings of the Combinatorial Pattern Matching, 20th Annual Symposium, 2009
2008
A small trip in the untranquil world of genomes: A survey on the detection and analysis of genome rearrangement breakpoints.
Theor. Comput. Sci., 2008
IEEE ACM Trans. Comput. Biol. Bioinform., 2008
Exploring the Solution Space of Sorting by Reversals, with Experiments and an Application to Evolution.
IEEE ACM Trans. Comput. Biol. Bioinform., 2008
J. Discrete Algorithms, 2008
BMC Bioinform., 2008
Proceedings of the Algorithms in Bioinformatics, 8th International Workshop, 2008
Efficient representation and <i>P</i>-value computation for high-order Markov motifs.
Proceedings of the ECCB'08 Proceedings, 2008
2007
The maximum agreement forest problem: Approximation algorithms and computational experiments.
Theor. Comput. Sci., 2007
IEEE ACM Trans. Comput. Biol. Bioinform., 2007
Metabolic network visualization eliminating node redundance and preserving metabolic pathways.
BMC Syst. Biol., 2007
Proceedings of the Bioinformatics Research and Applications, Third International Symposium, 2007
Proceedings of the AI 2007: Advances in Artificial Intelligence, 2007
2006
IEEE ACM Trans. Comput. Biol. Bioinform., 2006
An Efficient Algorithm for the Identification of Structured Motifs in DNA Promoter Sequences.
IEEE ACM Trans. Comput. Biol. Bioinform., 2006
Proceedings of the LATIN 2006: Theoretical Informatics, 2006
2005
IEEE ACM Trans. Comput. Biol. Bioinform., 2005
IEEE ACM Trans. Comput. Biol. Bioinform., 2005
Int. J. Found. Comput. Sci., 2005
Proceedings of the Algorithms in Bioinformatics, 5th International Workshop, 2005
Lossless Filter for Finding Long Multiple Approximate Repetitions Using a New Data Structure, the Bi-factor Array.
Proceedings of the String Processing and Information Retrieval, 2005
A Multiple Graph Layers Model with Application to RNA Secondary Structures Comparison.
Proceedings of the String Processing and Information Retrieval, 2005
A Pattern Extraction Algorithm for Abstract Melodic Representations that Allow Partial Overlapping of Intervallic Categories.
Proceedings of the ISMIR 2005, 2005
Proceedings of the Computing and Combinatorics, 11th Annual International Conference, 2005
Proceedings of 3rd Asia-Pacific Bioinformatics Conference, 17-21 January 2005, Singapore, 2005
2004
Proceedings of the Algorithms in Bioinformatics, 4th International Workshop, 2004
Proceedings of the String Processing and Information Retrieval, 2004
Proceedings of the String Processing and Information Retrieval, 2004
Proceedings of the 2004 ACM Symposium on Applied Computing (SAC), 2004
Proceedings of the LATIN 2004: Theoretical Informatics, 2004
Proceedings of the Combinatorial Pattern Matching, 15th Annual Symposium, 2004
2003
A Basis of Tiling Motifs for Generating Repeated Patterns and Its Complexity for Higher Quorum.
Proceedings of the Mathematical Foundations of Computer Science 2003, 2003
2002
J. Comput. Biol., 2002
2001
Proceedings of the Approximation, 2001
2000
Algorithms for Extracting Structured Motifs Using a Suffix Tree with an Application to Promoter and Regulatory Site Consensus Identification.
J. Comput. Biol., 2000
Extracting structured motifs using a suffix tree - algorithms and application to promoter consensus identification.
Proceedings of the Fourth Annual International Conference on Computational Molecular Biology, 2000
1998
J. Comput. Biol., 1998
Proceedings of the Second Annual International Conference on Research in Computational Molecular Biology, 1998
Proceedings of the LATIN '98: Theoretical Informatics, 1998
1997
Theor. Comput. Sci., 1997
Flexible Identification of Structural Objects in Nucleic Acid Sequences: Palindromes, Mirror Repeats, Pseudoknots and Triple Helices.
Proceedings of the Combinatorial Pattern Matching, 8th Annual Symposium, 1997
1996
Proceedings of the Combinatorial Pattern Matching, 7th Annual Symposium, 1996
1995
Finding flexible patterns in a text: an application to three-dimensional molecular matching.
Comput. Appl. Biosci., 1995
Proceedings of the Third International Conference on Intelligent Systems for Molecular Biology, 1995