Andrei Yu. Zinovyev
Orcid: 0000-0002-9517-7284Affiliations:
- PSL Research University, Institut Curie, Paris, France
- Lobachevsky University, Nizhny Novgorod, Russia
According to our database1,
Andrei Yu. Zinovyev
authored at least 71 papers
between 2003 and 2023.
Collaborative distances:
Collaborative distances:
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Online presence:
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on zbmath.org
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on orcid.org
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on ihes.fr
On csauthors.net:
Bibliography
2023
Omics data integration in computational biology viewed through the prism of machine learning paradigms.
Frontiers Bioinform., May, 2023
Domain Adaptation Principal Component Analysis: Base Linear Method for Learning with Out-of-Distribution Data.
Entropy, January, 2023
Exploring the impact of social stress on the adaptive dynamics of COVID-19: Typing the behavior of naïve populations faced with epidemics.
CoRR, 2023
2022
Coloring Panchromatic Nighttime Satellite Images: Comparing the Performance of Several Machine Learning Methods.
IEEE Trans. Geosci. Remote. Sens., 2022
BIODICA: a computational environment for Independent Component Analysis of omics data.
Bioinform., 2022
Hubness reduction improves clustering and trajectory inference in single-cell transcriptomic data.
Bioinform., 2022
Quasi-orthogonality and intrinsic dimensions as measures of learning and generalisation.
Proceedings of the International Joint Conference on Neural Networks, 2022
2021
Clinical trajectories estimated from bulk tumoral molecular profiles using elastic principal trees.
Proceedings of the International Joint Conference on Neural Networks, 2021
Proceedings of the Computational Methods in Systems Biology, 2021
2020
Collective intelligence defines biological functions in Wikipedia as communities in the hidden protein connection network.
PLoS Comput. Biol., 2020
Minimum Spanning vs. Principal Trees for Structured Approximations of Multi-Dimensional Datasets.
Entropy, 2020
Entropy, 2020
Trajectories, bifurcations and pseudotime in large clinical datasets: applications to myocardial infarction and diabetes data.
CoRR, 2020
BMC Bioinform., 2020
Bioinform., 2020
Proceedings of the 2020 International Joint Conference on Neural Networks, 2020
Proceedings of the Computational Methods in Systems Biology, 2020
2019
The Virtual Metabolic Human database: integrating human and gut microbiome metabolism with nutrition and disease.
Nucleic Acids Res., 2019
Lizard Brain: Tackling Locally Low-Dimensional Yet Globally Complex Organization of Multi-Dimensional Datasets.
Frontiers Neurorobotics, 2019
Metabolic and signalling network maps integration: application to cross-talk studies and omics data analysis in cancer.
BMC Bioinform., 2019
PhysiBoSS: a multi-scale agent-based modelling framework integrating physical dimension and cell signalling.
Bioinform., 2019
Assessing reproducibility of matrix factorization methods in independent transcriptomes.
Bioinform., 2019
Conceptual and computational framework for logical modelling of biological networks deregulated in diseases.
Briefings Bioinform., 2019
Briefings Bioinform., 2019
Estimating the effective dimension of large biological datasets using Fisher separability analysis.
Proceedings of the International Joint Conference on Neural Networks, 2019
Synthesis of Boolean Networks from Biological Dynamical Constraints using Answer-Set Programming.
Proceedings of the 31st IEEE International Conference on Tools with Artificial Intelligence, 2019
2018
Robust and scalable learning of data manifolds with complex topologies via ElPiGraph.
CoRR, 2018
Database J. Biol. Databases Curation, 2018
Data analysis with arbitrary error measures approximated by piece-wise quadratic PQSQ functions.
Proceedings of the 2018 International Joint Conference on Neural Networks, 2018
Application of Independent Component Analysis to Tumor Transcriptomes Reveals Specific and Reproducible Immune-Related Signals.
Proceedings of the Latent Variable Analysis and Signal Separation, 2018
2017
NetNorM: Capturing cancer-relevant information in somatic exome mutation data with gene networks for cancer stratification and prognosis.
PLoS Comput. Biol., 2017
NaviCom: a web application to create interactive molecular network portraits using multi-level omics data.
Database J. Biol. Databases Curation, 2017
2016
Calculating Biological Module Enrichment or Depletion and Visualizing Data on Large-scale Molecular Maps with ACSNMineR and RNaviCell Packages.
R J., 2016
Piece-wise quadratic approximations of arbitrary error functions for fast and robust machine learning.
Neural Networks, 2016
Piece-wise quadratic lego set for constructing arbitrary error potentials and their fast optimization.
CoRR, 2016
2015
Mathematical Modelling of Molecular Pathways Enabling Tumour Cell Invasion and Migration.
PLoS Comput. Biol., 2015
DeDaL: Cytoscape 3 app for producing and morphing data-driven and structure-driven network layouts.
BMC Syst. Biol., 2015
Fast and user-friendly non-linear principal manifold learning by method of elastic maps.
Proceedings of the 2015 IEEE International Conference on Data Science and Advanced Analytics, 2015
2014
ViDaExpert: user-friendly tool for nonlinear visualization and analysis of multidimensional vectorial data.
CoRR, 2014
2013
Synthetic Lethality between Gene Defects Affecting a Single Non-essential Molecular Pathway with Reversible Steps.
PLoS Comput. Biol., 2013
Blind source separation methods for deconvolution of complex signals in cancer biology
CoRR, 2013
BMC Syst. Biol., 2013
NaviCell: a web-based environment for navigation, curation and maintenance of large molecular interaction maps.
BMC Syst. Biol., 2013
BiNoM 2.0, a Cytoscape plugin for accessing and analyzing pathways using standard systems biology formats.
BMC Syst. Biol., 2013
Bioinform., 2013
Proceedings of the Advances in Computational Intelligence, 2013
2012
J. Bioinform. Comput. Biol., 2012
2011
Control-free calling of copy number alterations in deep-sequencing data using GC-content normalization.
Bioinform., 2011
2010
Mathematical Modelling of Cell-Fate Decision in Response to Death Receptor Engagement.
PLoS Comput. Biol., 2010
Principal Manifolds and Graphs in Practice: from Molecular Biology to Dynamical Systems.
Int. J. Neural Syst., 2010
BMC Syst. Biol., 2010
2009
Method for Relating Inter-patient Gene Copy Numbers Variations with Gene Expression via Gene Influence Networks.
Proceedings of the Workshops of the 5th IFIP Conference on Artificial Intelligence Applications & Innovations (AIAI-2009), 2009
2008
Bioinform., 2008
2007
Proceedings of the International Joint Conference on Neural Networks, 2007
2005
Four basic symmetry types in the universal 7-cluster structure of microbial genomic sequences.
Silico Biol., 2005
Computing, 2005
2003
Open Syst. Inf. Dyn., 2003