Andrei Yu. Zinovyev

According to our database1, Andrei Yu. Zinovyev authored at least 51 papers between 2003 and 2019.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.



In proceedings 
PhD thesis 





The Virtual Metabolic Human database: integrating human and gut microbiome metabolism with nutrition and disease.
Nucleic Acids Research, 2019

Estimating the effective dimension of large biological datasets using Fisher separability analysis.
CoRR, 2019

Metabolic and signalling network maps integration: application to cross-talk studies and omics data analysis in cancer.
BMC Bioinformatics, 2019

PhysiBoSS: a multi-scale agent-based modelling framework integrating physical dimension and cell signalling.
Bioinformatics, 2019

Robust and scalable learning of data manifolds with complex topologies via ElPiGraph.
CoRR, 2018

Signalling maps in cancer research: construction and data analysis.
Database, 2018

Data analysis with arbitrary error measures approximated by piece-wise quadratic PQSQ functions.
Proceedings of the 2018 International Joint Conference on Neural Networks, 2018

Application of Independent Component Analysis to Tumor Transcriptomes Reveals Specific and Reproducible Immune-Related Signals.
Proceedings of the Latent Variable Analysis and Signal Separation, 2018

NetNorM: Capturing cancer-relevant information in somatic exome mutation data with gene networks for cancer stratification and prognosis.
PLoS Computational Biology, 2017

MaBoSS 2.0: an environment for stochastic Boolean modeling.
Bioinformatics, 2017

NaviCom: a web application to create interactive molecular network portraits using multi-level omics data.
Database, 2017

Piece-wise quadratic approximations of arbitrary error functions for fast and robust machine learning.
Neural Networks, 2016

Piece-wise quadratic lego set for constructing arbitrary error potentials and their fast optimization.
CoRR, 2016

Robust principal graphs for data approximation.
CoRR, 2016

Mathematical Modelling of Molecular Pathways Enabling Tumour Cell Invasion and Migration.
PLoS Computational Biology, 2015

NaviCell Web Service for network-based data visualization.
Nucleic Acids Research, 2015

DeDaL: Cytoscape 3 app for producing and morphing data-driven and structure-driven network layouts.
BMC Systems Biology, 2015

Fast and user-friendly non-linear principal manifold learning by method of elastic maps.
Proceedings of the 2015 IEEE International Conference on Data Science and Advanced Analytics, 2015

ViDaExpert: user-friendly tool for nonlinear visualization and analysis of multidimensional vectorial data.
CoRR, 2014

Synthetic Lethality between Gene Defects Affecting a Single Non-essential Molecular Pathway with Reversible Steps.
PLoS Computational Biology, 2013

Geometrical complexity of data approximators
CoRR, 2013

Blind source separation methods for deconvolution of complex signals in cancer biology
CoRR, 2013

Data complexity measured by principal graphs.
Computers & Mathematics with Applications, 2013

Model composition through model reduction: a combined model of CD95 and NF-κ.
BMC Systems Biology, 2013

NaviCell: a web-based environment for navigation, curation and maintenance of large molecular interaction maps.
BMC Systems Biology, 2013

BiNoM 2.0, a Cytoscape plugin for accessing and analyzing pathways using standard systems biology formats.
BMC Systems Biology, 2013

OCSANA: optimal combinations of interventions from network analysis.
Bioinformatics, 2013

Geometrical Complexity of Data Approximators.
Proceedings of the Advances in Computational Intelligence, 2013

Identification of Shortened 3′ untranslated Regions from Expression Arrays.
J. Bioinformatics and Computational Biology, 2012

Data complexity measured by principal graphs
CoRR, 2012

Control-free calling of copy number alterations in deep-sequencing data using GC-content normalization.
Bioinformatics, 2011

Mathematical Modelling of Cell-Fate Decision in Response to Death Receptor Engagement.
PLoS Computational Biology, 2010

Principal Manifolds and Graphs in Practice: from Molecular Biology to Dynamical Systems.
Int. J. Neural Syst., 2010

Nonlinear Quality of Life Index
CoRR, 2010

Data visualization in political and social sciences
CoRR, 2010

Principal manifolds and graphs in practice: from molecular biology to dynamical systems
CoRR, 2010

Dynamical modeling of microRNA action on the protein translation process.
BMC Systems Biology, 2010

Method for Relating Inter-patient Gene Copy Numbers Variations with Gene Expression via Gene Influence Networks.
Proceedings of the Workshops of the 5th IFIP Conference on Artificial Intelligence Applications & Innovations (AIAI-2009), 2009

Principal Graphs and Manifolds
CoRR, 2008

Robust simplifications of multiscale biochemical networks.
BMC Systems Biology, 2008

BiNoM: a Cytoscape plugin for manipulating and analyzing biological networks.
Bioinformatics, 2008

Classification of microarray data using gene networks.
BMC Bioinformatics, 2007

Topological grammars for data approximation.
Appl. Math. Lett., 2007

Branching Principal Components: Elastic Graphs, Topological Grammars and Metro Maps.
Proceedings of the International Joint Conference on Neural Networks, 2007

Topological Grammars for Data Approximation
CoRR, 2006

Four basic symmetry types in the universal 7-cluster structure of microbial genomic sequences.
In Silico Biology, 2005

Elastic Principal Graphs and Manifolds and their Practical Applications.
Computing, 2005

Self-Organizing Approach for Automated Gene Identification.
Open Syst. Inform. Dynam., 2003

Seven clusters in genomic triplet distributions.
In Silico Biology, 2003

Seven clusters in genomic triplet distributions
CoRR, 2003

Codon adaptation index as a measure of dominating codon bias.
Bioinformatics, 2003