Andrei Yu. Zinovyev
According to our database1, Andrei Yu. Zinovyev authored at least 51 papers between 2003 and 2019.
Legend:Book In proceedings Article PhD thesis Other
The Virtual Metabolic Human database: integrating human and gut microbiome metabolism with nutrition and disease.
Nucleic Acids Research, 2019
Estimating the effective dimension of large biological datasets using Fisher separability analysis.
Metabolic and signalling network maps integration: application to cross-talk studies and omics data analysis in cancer.
BMC Bioinformatics, 2019
PhysiBoSS: a multi-scale agent-based modelling framework integrating physical dimension and cell signalling.
Robust and scalable learning of data manifolds with complex topologies via ElPiGraph.
Signalling maps in cancer research: construction and data analysis.
Data analysis with arbitrary error measures approximated by piece-wise quadratic PQSQ functions.
Proceedings of the 2018 International Joint Conference on Neural Networks, 2018
Application of Independent Component Analysis to Tumor Transcriptomes Reveals Specific and Reproducible Immune-Related Signals.
Proceedings of the Latent Variable Analysis and Signal Separation, 2018
NetNorM: Capturing cancer-relevant information in somatic exome mutation data with gene networks for cancer stratification and prognosis.
PLoS Computational Biology, 2017
MaBoSS 2.0: an environment for stochastic Boolean modeling.
NaviCom: a web application to create interactive molecular network portraits using multi-level omics data.
Piece-wise quadratic approximations of arbitrary error functions for fast and robust machine learning.
Neural Networks, 2016
Piece-wise quadratic lego set for constructing arbitrary error potentials and their fast optimization.
Robust principal graphs for data approximation.
Mathematical Modelling of Molecular Pathways Enabling Tumour Cell Invasion and Migration.
PLoS Computational Biology, 2015
NaviCell Web Service for network-based data visualization.
Nucleic Acids Research, 2015
DeDaL: Cytoscape 3 app for producing and morphing data-driven and structure-driven network layouts.
BMC Systems Biology, 2015
Fast and user-friendly non-linear principal manifold learning by method of elastic maps.
Proceedings of the 2015 IEEE International Conference on Data Science and Advanced Analytics, 2015
ViDaExpert: user-friendly tool for nonlinear visualization and analysis of multidimensional vectorial data.
Synthetic Lethality between Gene Defects Affecting a Single Non-essential Molecular Pathway with Reversible Steps.
PLoS Computational Biology, 2013
Geometrical complexity of data approximators
Blind source separation methods for deconvolution of complex signals in cancer biology
Data complexity measured by principal graphs.
Computers & Mathematics with Applications, 2013
Model composition through model reduction: a combined model of CD95 and NF-κ.
BMC Systems Biology, 2013
NaviCell: a web-based environment for navigation, curation and maintenance of large molecular interaction maps.
BMC Systems Biology, 2013
BiNoM 2.0, a Cytoscape plugin for accessing and analyzing pathways using standard systems biology formats.
BMC Systems Biology, 2013
OCSANA: optimal combinations of interventions from network analysis.
Geometrical Complexity of Data Approximators.
Proceedings of the Advances in Computational Intelligence, 2013
Identification of Shortened 3′ untranslated Regions from Expression Arrays.
J. Bioinformatics and Computational Biology, 2012
Data complexity measured by principal graphs
Control-free calling of copy number alterations in deep-sequencing data using GC-content normalization.
Mathematical Modelling of Cell-Fate Decision in Response to Death Receptor Engagement.
PLoS Computational Biology, 2010
Principal Manifolds and Graphs in Practice: from Molecular Biology to Dynamical Systems.
Int. J. Neural Syst., 2010
Nonlinear Quality of Life Index
Data visualization in political and social sciences
Principal manifolds and graphs in practice: from molecular biology to dynamical systems
Dynamical modeling of microRNA action on the protein translation process.
BMC Systems Biology, 2010
Method for Relating Inter-patient Gene Copy Numbers Variations with Gene Expression via Gene Influence Networks.
Proceedings of the Workshops of the 5th IFIP Conference on Artificial Intelligence Applications & Innovations (AIAI-2009), 2009
Principal Graphs and Manifolds
Robust simplifications of multiscale biochemical networks.
BMC Systems Biology, 2008
BiNoM: a Cytoscape plugin for manipulating and analyzing biological networks.
Classification of microarray data using gene networks.
BMC Bioinformatics, 2007
Topological grammars for data approximation.
Appl. Math. Lett., 2007
Branching Principal Components: Elastic Graphs, Topological Grammars and Metro Maps.
Proceedings of the International Joint Conference on Neural Networks, 2007
Topological Grammars for Data Approximation
Four basic symmetry types in the universal 7-cluster structure of microbial genomic sequences.
In Silico Biology, 2005
Elastic Principal Graphs and Manifolds and their Practical Applications.
Self-Organizing Approach for Automated Gene Identification.
Open Syst. Inform. Dynam., 2003
Seven clusters in genomic triplet distributions.
In Silico Biology, 2003
Seven clusters in genomic triplet distributions
Codon adaptation index as a measure of dominating codon bias.