Alexander Johan Nederbragt

According to our database, Alexander Johan Nederbragt authored at least 7 papers between 2015 and 2020.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2020

Ten quick tips for teaching with participatory live coding.

Alexander Johan Nederbragt, Rayna Michelle Harris, Alison Presmanes Hill, Greg Wilson

PLoS Comput. Biol., 2020

NucBreak: location of structural errors in a genome assembly by using paired-end Illumina reads.

Ksenia Khelik, Geir Kjetil Sandve, Alexander Johan Nederbragt, Torbjørn Rognes

BMC Bioinform., 2020

2019

Graph Peak Caller: Calling ChIP-seq peaks on graph-based reference genomes.

Ivar Grytten, Knut D. Rand, Alexander Johan Nederbragt, Geir Storvik, Ingrid Kristine Glad, Geir Kjetil Sandve

PLoS Comput. Biol., 2019

2017

Good enough practices in scientific computing.

Greg Wilson, Jennifer Bryan, Karen Cranston, Justin Kitzes, Lex Nederbragt, Tracy K. Teal

PLoS Comput. Biol., 2017

Coordinates and intervals in graph-based reference genomes.

Knut D. Rand, Ivar Grytten, Alexander Johan Nederbragt, Geir Storvik, Ingrid Kristine Glad, Geir Kjetil Sandve

BMC Bioinform., 2017

NucDiff: in-depth characterization and annotation of differences between two sets of DNA sequences.

Ksenia Khelik, Karin Lagesen, Geir Kjetil Sandve, Torbjørn Rognes, Alexander Johan Nederbragt

BMC Bioinform., 2017

2015

The khmer software package: enabling efficient nucleotide sequence analysis.

Michael R. Crusoe, Hussien F. Alameldin, Sherine Awad, Elmar Boucher, Adam Caldwell, Reed Cartwright, Amanda Charbonneau, Bede Constantinides, Greg Edvenson, Scott A. Fay, Jacob Fenton, Thomas Fenzl, Jordan A. Fish, Leonor Garcia-Gutierrez, Phillip Garland, Jonathan Gluck, Iván González, Sarah Guermond, Jiarong Guo, Aditi Gupta, Joshua R. Herr, Adina Howe, Alex Hyer, Andreas Härpfer, Luiz Irber, Rhys Kidd, David Lin, Justin Lippi, Tamer A. Mansour, Pamela McA'Nulty, Eric McDonald, Jessica Mizzi, Kevin D. Murray, Joshua R. Nahum, Kaben Nanlohy, Alexander Johan Nederbragt, Humberto Ortiz-Zuazaga, Jeramia Ory, Jason Pell, Charles Pepe-Ranney, Zachary N. Russ, Erich M. Schwarz, Camille Scott, Josiah D. Seaman, Scott Sievert, Jared Simpson, Connor Skennerton, James Spencer, Ramakrishnan Srinivasan, Daniel S. Standage, James A. Stapleton, Susan R. Steinman, Joe Stein, Benjamin Taylor, Will Trimble, Heather Wiencko, Michael Wright, Brian Wyss, Qingpeng Zhang, en zyme, C. Titus Brown

F1000Research, 2015