Alexander Lachmann

Orcid: 0000-0002-1982-7652

According to our database1, Alexander Lachmann authored at least 26 papers between 2008 and 2023.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

Legend:

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PhD thesis 
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Links

On csauthors.net:

Bibliography

2023
lncHUB2: aggregated and inferred knowledge about human and mouse lncRNAs.
Database J. Biol. Databases Curation, March, 2023

2022
SigCom LINCS: data and metadata search engine for a million gene expression signatures.
Nucleic Acids Res., 2022

DrugShot: querying biomedical search terms to retrieve prioritized lists of small molecules.
BMC Bioinform., 2022

blitzGSEA: efficient computation of gene set enrichment analysis through gamma distribution approximation.
Bioinform., 2022

2021
Appyters: Turning Jupyter Notebooks into data-driven web apps.
Patterns, 2021

KEA3: improved kinase enrichment analysis via data integration.
Nucleic Acids Res., 2021

Drugmonizome and Drugmonizome-ML: integration and abstraction of small molecule attributes for drug enrichment analysis and machine learning.
Database J. Biol. Databases Curation, 2021

2020
The COVID-19 Drug and Gene Set Library.
Patterns, 2020

LINCS Data Portal 2.0: next generation access point for perturbation-response signatures.
Nucleic Acids Res., 2020

EnrichrBot: Twitter bot tracking tweets about human genes.
Bioinform., 2020

2019
Geneshot: search engine for ranking genes from arbitrary text queries.
Nucleic Acids Res., 2019

modEnrichr: a suite of gene set enrichment analysis tools for model organisms.
Nucleic Acids Res., 2019

ChEA3: transcription factor enrichment analysis by orthogonal omics integration.
Nucleic Acids Res., 2019

2018
eXpression2Kinases (X2K) Web: linking expression signatures to upstream cell signaling networks.
Nucleic Acids Res., 2018

L1000FWD: fireworks visualization of drug-induced transcriptomic signatures.
Bioinform., 2018

2017
Systematic, network-based characterization of therapeutic target inhibitors.
PLoS Comput. Biol., 2017

2016
Enrichr: a comprehensive gene set enrichment analysis web server 2016 update.
Nucleic Acids Res., 2016

ARACNe-AP: gene network reverse engineering through adaptive partitioning inference of mutual information.
Bioinform., 2016

Detection and removal of spatial bias in multiwell assays.
Bioinform., 2016

2011
FNV: light-weight flash-based network and pathway viewer.
Bioinform., 2011

2010
Lists2Networks: Integrated analysis of gene/protein lists.
BMC Bioinform., 2010

GATE: software for the analysis and visualization of high-dimensional time series expression data.
Bioinform., 2010

ChEA: transcription factor regulation inferred from integrating genome-wide ChIP-X experiments.
Bioinform., 2010

Inferring the Sign of Kinase-Substrate Interactions by Combining Quantitative Phosphoproteomics with a Literature-Based Mammalian Kinome Network.
Proceedings of the 10th IEEE International Conference on Bioinformatics and Bioengineering, 2010

2009
KEA: kinase enrichment analysis.
Bioinform., 2009

2008
Finding relevant patterns in bursty sequences.
Proc. VLDB Endow., 2008


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