Daniel J. B. Clarke

Orcid: 0000-0003-3471-7416

Affiliations:
  • Icahn School of Medicine at Mount Sinai, New York, NY, USA
  • Fairleigh Dickinson University, Teaneck, NJ, USA


According to our database1, Daniel J. B. Clarke authored at least 20 papers between 2016 and 2023.

Collaborative distances:
  • Dijkstra number2 of five.
  • Erdős number3 of four.

Timeline

Legend:

Book 
In proceedings 
Article 
PhD thesis 
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Other 

Links

Online presence:

On csauthors.net:

Bibliography

2023
GeneRanger and TargetRanger: processed gene and protein expression levels across cells and tissues for target discovery.
Nucleic Acids Res., July, 2023

Enrichr-KG: bridging enrichment analysis across multiple libraries.
Nucleic Acids Res., July, 2023

lncHUB2: aggregated and inferred knowledge about human and mouse lncRNAs.
Database J. Biol. Databases Curation, March, 2023

2022
SigCom LINCS: data and metadata search engine for a million gene expression signatures.
Nucleic Acids Res., 2022

DrugShot: querying biomedical search terms to retrieve prioritized lists of small molecules.
BMC Bioinform., 2022

Transforming L1000 profiles to RNA-seq-like profiles with deep learning.
BMC Bioinform., 2022

2021
Appyters: Turning Jupyter Notebooks into data-driven web apps.
Patterns, 2021

Drugmonizome and Drugmonizome-ML: integration and abstraction of small molecule attributes for drug enrichment analysis and machine learning.
Database J. Biol. Databases Curation, 2021

2020
The COVID-19 Drug and Gene Set Library.
Patterns, 2020

LINCS Data Portal 2.0: next generation access point for perturbation-response signatures.
Nucleic Acids Res., 2020

Perspectives on emerging directions in using IoT devices in blockchain applications.
Internet Things, 2020

EnrichrBot: Twitter bot tracking tweets about human genes.
Bioinform., 2020

2019
Capacity Building for a Cybersecurity Workforce Through Hands-on Labs for Internet-of-Things Security.
Proceedings of the National Cyber Summit, 2019

2018
eXpression2Kinases (X2K) Web: linking expression signatures to upstream cell signaling networks.
Nucleic Acids Res., 2018

Building an Open Health Data Analytics Platform: a Case Study Examining Relationships and Trends in Seniority and Performance in Healthcare Providers.
J. Heal. Informatics Res., 2018

A system for exploring big data: an iterative k-means searchlight for outlier detection on open health data.
Proceedings of the 2018 International Joint Conference on Neural Networks, 2018

A comparison of models to predict medical procedure costs from open public healthcare data.
Proceedings of the 2018 International Joint Conference on Neural Networks, 2018

2017
Hiding in plain sight: insights about health-care trends gained through open health data.
CoRR, 2017

An open-source framework for the interactive exploration of Big Data: Applications in understanding health care.
Proceedings of the 2017 International Joint Conference on Neural Networks, 2017

2016
A fully integrated open-source toolkit for mining healthcare big-data: architecture and applications.
Proceedings of the 2016 IEEE International Conference on Healthcare Informatics, 2016


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