Alfonso Rodríguez-Patón

According to our database1, Alfonso Rodríguez-Patón authored at least 75 papers between 1998 and 2019.

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Bibliography

2019
Meta-Path Methods for Prioritizing Candidate Disease miRNAs.
IEEE/ACM Trans. Comput. Biology Bioinform., 2019

2018
Spiking Neural P Systems With Colored Spikes.
IEEE Trans. Cognitive and Developmental Systems, 2018

Preface.
Natural Computing, 2018

Structural Hole Spanner in HumanNet Identifies Disease Gene and Drug targets.
IEEE Access, 2018

A Parallel Bioinspired Framework for Numerical Calculations Using Enzymatic P System With an Enzymatic Environment.
IEEE Access, 2018

An Implementation of Elementary Arithmetic with Virus Machine.
Proceedings of the Enjoying Natural Computing, 2018

LncRNA-disease association prediction based on neighborhood information aggregation in neural network.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

2017
Directed evolution of biocircuits using conjugative plasmids and CRISPR-Cas9: design and in silico experiments.
Natural Computing, 2017

Theory and Application of Bio-inspired Intelligence and Methods.
J. UCS, 2017

P Systems Simulating Bacterial Conjugation: Universality and Properties.
Fundam. Inform., 2017

A novel fault diagnosis scheme applying fuzzy clustering algorithms.
Appl. Soft Comput., 2017

Simulating multicell populations with an accelerated gro simulator.
Proceedings of the Fourteenth European Conference Artificial Life, 2017

Iteratively collective prediction of disease-gene associations through the incomplete network.
Proceedings of the 2017 IEEE International Conference on Bioinformatics and Biomedicine, 2017

2016
EvoPER - An R package for applying evolutionary computation methods in the parameter estimation of individual-based models implemented in Repast.
PeerJ PrePrints, 2016

2015
An Autonomous In Vivo Dual Selection Protocol for Boolean Genetic Circuits.
Artificial Life, 2015

A Preliminary Assessment of Three Strategies for the Agent-Based Modeling of Bacterial Conjugation.
Proceedings of the 9th International Conference on Practical Applications of Computational Biology and Bioinformatics, 2015

BactoSim - An Individual-Based Simulation Environment for Bacterial Conjugation.
Proceedings of the Advances in Practical Applications of Agents, Multi-Agent Systems, and Sustainability: The PAAMS Collection, 2015

2014
DNA strand displacement system running logic programs.
Biosystems, 2014

2013
P systems with proteins on membranes characterize PSPACE.
Theor. Comput. Sci., 2013

Probabilistic Reasoning with an Enzyme-Driven DNA Device.
Proceedings of the DNA Computing and Molecular Programming - 19th International Conference, 2013

2012
DNA biosensors that reason.
Biosystems, 2012

Distributed Computing with Prokaryotic Immune Systems.
Proceedings of the Artificial Immune Systems - 11th International Conference, 2012

Probabilistic Reasoning with a Bayesian DNA Device Based on Strand Displacement.
Proceedings of the DNA Computing and Molecular Programming - 18th International Conference, 2012

2011
On the scalability of biocomputing algorithms: The case of the maximum clique problem.
Theor. Comput. Sci., 2011

A review of the nondeterministic waiting time algorithm.
Natural Computing, 2011

On the Power of Families of Recognizer Spiking Neural P Systems.
Int. J. Found. Comput. Sci., 2011

P Systems with proteins on Membranes: a Survey.
Int. J. Found. Comput. Sci., 2011

Simulating a Rock-Scissors-Paper Bacterial Game with a Discrete Cellular Automaton.
Proceedings of the New Challenges on Bioinspired Applications, 2011

Poster: Biochemical signaling: A discrete simulation with memory enhancement.
Proceedings of the IEEE 1st International Conference on Computational Advances in Bio and Medical Sciences, 2011

Autonomous Resolution Based on DNA Strand Displacement.
Proceedings of the DNA Computing and Molecular Programming - 17th International Conference, 2011

2010
Biomolecular Computing Devices in Synthetic Biology.
IJNMC, 2010

Inference with DNA Molecules.
Proceedings of the Unconventional Computation - 9th International Conference, 2010

Polynomial Complexity Classes in Spiking Neural P Systems.
Proceedings of the Membrane Computing, 2010

2009
Grammar-Guided Genetic Programming.
Proceedings of the Encyclopedia of Artificial Intelligence (3 Volumes), 2009

On the Hopcroft's minimization technique for DFA and DFCA.
Theor. Comput. Sci., 2009

Sequential SNP systems based on min/max spike number.
Theor. Comput. Sci., 2009

Spiking Neural P Systems: Stronger Normal Forms.
IJUC, 2009

On the Power of Computing with Proteins on Membranes.
Proceedings of the Membrane Computing, 10th International Workshop, 2009

A New Model of Synthetic Genetic Oscillator Based on Trans-Acting Repressor Ribozyme.
Proceedings of the Distributed Computing, 2009

2008
On the power of elementary features in spiking neural P systems.
Natural Computing, 2008

Discrete Nondeterministic Modeling of the Fas Pathway.
Int. J. Found. Comput. Sci., 2008

Hopcroft's Minimization Technique: Queues or Stacks?.
Proceedings of the Implementation and Applications of Automata, 2008

Effects of HIV-1 Proteins on the Fas-Mediated Apoptotic Signaling Cascade: A Computational Study of Latent CD4+ T Cell Activation.
Proceedings of the Membrane Computing - 9th International Workshop, 2008

Sequentiality Induced by Spike Number in SNP Systems.
Proceedings of the DNA Computing, 14th International Meeting on DNA Computing, 2008

2007
Normal forms for spiking neural P systems.
Theor. Comput. Sci., 2007

Crossover and mutation operators for grammar-guided genetic programming.
Soft Comput., 2007

Towards a lessons learned system for critical software.
Rel. Eng. & Sys. Safety, 2007

Initialization method for grammar-guided genetic programming.
Knowl.-Based Syst., 2007

Membrane computing and complexity theory: A characterization of PSPACE.
J. Comput. Syst. Sci., 2007

A P system and a constructive membrane-inspired DNA algorithm for solving the Maximum Clique Problem.
Biosystems, 2007

On Flip-Flop Membrane Systems with Proteins.
Proceedings of the Membrane Computing, 8th International Workshop, 2007

A Parallel DNA Algorithm Using a Microfluidic Device to Build Scheduling Grids.
Proceedings of the Bio-inspired Modeling of Cognitive Tasks, 2007

Towards a Robust Biocomputing Solution of Intractable Problems.
Proceedings of the DNA Computing, 13th International Meeting on DNA Computing, 2007

2006
Algebraic properties of substitution on trajectories.
Theor. Comput. Sci., 2006

Evolutionary system for automatically constructing and adapting radial basis function networks.
Neurocomputing, 2006

Initialization Method for Grammar-Guided Genetic Programming.
Proceedings of the Research and Development in Intelligent Systems XXIII, 2006

P Systems with Symport/Antiport and Time.
Proceedings of the Membrane Computing, 7th International Workshop, 2006

P Systems with Active Membranes Characterize PSPACE.
Proceedings of the DNA Computing, 12th International Meeting on DNA Computing, 2006

2005
A tissue P system and a DNA microfluidic device for solving the shortest common superstring problem.
Soft Comput., 2005

A tissue P system and a DNA microfluidic device for solving the shortest common superstring problem.
Soft Comput., 2005

Symport/Antiport P Systems with Three Objects Are Universal.
Fundam. Inform., 2005

Grammar Based Crossover Operator in Genetic Programming.
Proceedings of the Artificial Intelligence and Knowledge Engineering Applications: A Bioinspired Approach: First International Work-Conference on the Interplay Between Natural and Artificial Computation, 2005

2004
A DNA Algorithm for the Hamiltonian Path Problem Using Microfluidic Systems.
Proceedings of the Aspects of Molecular Computing, 2004

2003
Tissue P systems.
Theor. Comput. Sci., 2003

Solving SAT in Linear Time with a Neural-Like Membrane System.
Proceedings of the Artificial Neural Nets Problem Solving Methods, 2003

Restricted Concatenation Inspired by DNA Strand Assembly
Proceedings of the Grammars and Automata for String Processing: From Mathematics and Computer Science to Biology, 2003

2002
On the Power of P Systems with DNA-Worm-Objects.
Fundam. Inform., 2002

MEGICO: An Intelligent Knowledge Management Methodology.
Proceedings of the Knowledge Engineering and Knowledge Management. Ontologies and the Semantic Web, 2002

A New Class of Symbolic Abstract Neural Nets: Tissue P Systems.
Proceedings of the Computing and Combinatorics, 8th Annual International Conference, 2002

2001
On the Universality of P Systems with Membrane Creation.
Bulletin of the EATCS, 2001

Further Remarks on P Systems with Symport Rules.
Sci. Ann. Cuza Univ., 2001

On P Systems with Membrane Creation.
The Computer Science Journal of Moldova, 2001

2000
Conditional Concatenation.
Fundam. Inform., 2000

Computing with Membranes: P Systems with Worm-Objects.
Proceedings of the Seventh International Symposium on String Processing and Information Retrieval, 2000

1998
Molecular Computation for Genetic Algorithms.
Proceedings of the Rough Sets and Current Trends in Computing, 1998


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