Alison Callahan

According to our database, Alison Callahan authored at least 32 papers between 2010 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

Standing on FURM ground - A framework for evaluating Fair, Useful, and Reliable AI Models in healthcare systems.

Alison Callahan, Duncan C. McElfresh, Juan M. Banda, Gabrielle Bunney, Danton Char, Jonathan H. Chen, Conor K. Corbin, Debadutta Dash, Norman L. Downing, Sneha S. Jain, Nikesh Kotecha, Jonathan Masterson, Michelle M. Mello, Keith E. Morse, Srikar Nallan, Abby Pandya, Anurang Revri, Aditya Sharma, Christopher D. Sharp, Rahul Thapa, Michael Wornow, Alaa Youssef, Michael A. Pfeffer, Nigam H. Shah

CoRR, 2024

MedAlign: A Clinician-Generated Dataset for Instruction Following with Electronic Medical Records.

Scott L. Fleming, Alejandro Lozano, William J. Haberkorn, Jenelle A. Jindal, Eduardo Pontes Reis, Rahul Thapa, Louis Blankemeier, Julian Z. Genkins, Ethan Steinberg, Ashwin Nayak, Birju S. Patel, Chia-Chun Chiang, Alison Callahan, Zepeng Huo, Sergios Gatidis, Scott J. Adams, Oluseyi Fayanju, Shreya J. Shah, Thomas Savage, Ethan Goh, Akshay S. Chaudhari, Nima Aghaeepour, Christopher D. Sharp, Michael A. Pfeffer, Percy Liang, Jonathan H. Chen, Keith E. Morse, Emma P. Brunskill, Jason A. Fries, Nigam H. Shah

Proceedings of the Thirty-Eighth AAAI Conference on Artificial Intelligence, 2024

2023

APLUS: A Python library for usefulness simulations of machine learning models in healthcare.

Michael Wornow, Elsie Gyang Ross, Alison Callahan, Nigam H. Shah

J. Biomed. Informatics, March, 2023

Principled estimation and evaluation of treatment effect heterogeneity: A case study application to dabigatran for patients with atrial fibrillation.

Yizhe Xu, Katelyn K. Bechler, Alison Callahan, Nigam Shah

J. Biomed. Informatics, 2023

2022

Considerations in the reliability and fairness audits of predictive models for advance care planning.

Jonathan Lu, Amelia Sattler, Samantha Wang, Ali Raza Khaki, Alison Callahan, Scott L. Fleming, Rebecca Fong, Benjamin Ehlert, Ron C. Li, Lisa Shieh, Kavitha Ramchandran, Michael Gensheimer, Sarah Chobot, Stephen Pfohl, Siyun Li, Kenny Shum, Nitin Parikh, Priya Desai, Briththa Seevaratnam, Melanie Hanson, Margaret Smith, Yizhe Xu, Arjun Gokhale, Steven Lin, Michael A. Pfeffer, Winifred Teuteberg, Nigam H. Shah

Frontiers Digit. Health, 2022

BigBIO: A Framework for Data-Centric Biomedical Natural Language Processing.

Jason Alan Fries, Leon Weber, Natasha Seelam, Gabriel Altay, Debajyoti Datta, Samuele Garda, Myungsun Kang, Ruisi Su, Wojciech Kusa, Samuel Cahyawijaya, Fabio Barth, Simon Ott, Matthias Samwald, Stephen H. Bach, Stella Biderman, Mario Sänger, Bo Wang, Alison Callahan, Daniel León Periñán, Théo Gigant, Patrick Haller, Jenny Chim, José David Posada, John Michael Giorgi, Karthik Rangasai Sivaraman, Marc Pàmies, Marianna Nezhurina, Robert Martin, Michael Cullan, Moritz Freidank, Nathan Dahlberg, Shubhanshu Mishra, Shamik Bose, Nicholas Michio Broad, Yanis Labrak, Shlok S. Deshmukh, Sid Kiblawi, Ayush Singh, Minh Chien Vu, Trishala Neeraj, Jonas Golde, Albert Villanova del Moral, Benjamin Beilharz

CoRR, 2022

BigBio: A Framework for Data-Centric Biomedical Natural Language Processing.

Jason A. Fries, Leon Weber, Natasha Seelam, Gabriel Altay, Debajyoti Datta, Samuele Garda, Sunny Kang, Rosaline Su, Wojciech Kusa, Samuel Cahyawijaya, Fabio Barth, Simon Ott, Matthias Samwald, Stephen H. Bach, Stella Biderman, Mario Sänger, Bo Wang, Alison Callahan, Daniel León Periñán, Théo Gigant, Patrick Haller, Jenny Chim, José D. Posada, John M. Giorgi, Karthik Rangasai Sivaraman, Marc Pàmies, Marianna Nezhurina, Robert Martin, Michael Cullan, Moritz Freidank, Nathan Dahlberg, Shubhanshu Mishra, Shamik Bose, Nicholas Broad, Yanis Labrak, Shlok Deshmukh, Sid Kiblawi, Ayush Singh, Minh Chien Vu, Trishala Neeraj, Jonas Golde, Albert Villanova del Moral, Benjamin Beilharz

Proceedings of the Advances in Neural Information Processing Systems 35: Annual Conference on Neural Information Processing Systems 2022, 2022

Real-World Data at the Point-of-Care: Exploring Education Needs Across All Stakeholders.

Julian Genkins, Dev Dash, Lillian Sung, Saurabh Gombar, Alison Callahan

Proceedings of the AMIA 2022, 2022

2021

ACE: the Advanced Cohort Engine for searching longitudinal patient records.

Alison Callahan, Vladimir Polony, José D. Posada, Juan M. Banda, Saurabh Gombar, Nigam H. Shah

J. Am. Medical Informatics Assoc., 2021

2020

Estimating the efficacy of symptom-based screening for COVID-19.

Alison Callahan, Ethan Steinberg, Jason A. Fries, Saurabh Gombar, Birju S. Patel, Conor K. Corbin, Nigam H. Shah

npj Digit. Medicine, 2020

Measure what matters: Counts of hospitalized patients are a better metric for health system capacity planning for a reopening.

Sehj Kashyap, Saurabh Gombar, Steve Yadlowsky, Alison Callahan, Jason A. Fries, Benjamin A. Pinsky, Nigam H. Shah

J. Am. Medical Informatics Assoc., 2020

Trove: Ontology-driven weak supervision for medical entity classification.

Jason A. Fries, Ethan Steinberg, Saelig Khattar, Scott L. Fleming, José D. Posada, Alison Callahan, Nigam H. Shah

CoRR, 2020

2019

It is time to learn from patients like mine.

Saurabh Gombar, Alison Callahan, Robert M. Califf, Robert A. Harrington, Nigam H. Shah

npj Digit. Medicine, 2019

Medical device surveillance with electronic health records.

Alison Callahan, Jason A. Fries, Christopher Ré, James I Huddleston III, Nicholas J. Giori, Scott L. Delp, Nigam H. Shah

npj Digit. Medicine, 2019

Learning Across a Healthcare Data Network to Improve Model Robustness and Evidence Reliability.

Noémie Elhadad, Iñigo Urteaga, Alison Callahan, Jenna Reps, Patrick B. Ryan

Proceedings of the AMIA 2019, 2019

2016

RegenBase: a knowledge base of spinal cord injury biology for translational research.

Alison Callahan, Saminda Abeyruwan, Hassan Al-Ali, Kunie Sakurai, Adam R. Ferguson, Phillip G. Popovich, Nigam H. Shah, Ubbo Visser, John L. Bixby, Vance P. Lemmon

Database J. Biol. Databases Curation, 2016

Discovering Patient Phenotypes Using Generalized Low Rank Models.

Alejandro Schuler, Vincent X. Liu, Joe Wan, Alison Callahan, Madeleine Udell, David E. Stark, Nigam H. Shah

Proceedings of the Biocomputing 2016: Proceedings of the Pacific Symposium, 2016

2015

An evidence-based approach to identify aging-related genes in Caenorhabditis elegans.

Alison Callahan, Juan Cifuentes, Michel Dumontier

BMC Bioinform., 2015

Analyzing Search Behavior of Healthcare Professionals for Drug Safety Surveillance.

David J. Odgers, Rave Harpaz, Alison Callahan, Gregor Stiglic, Nigam H. Shah

Proceedings of the Biocomputing 2015: Proceedings of the Pacific Symposium, 2015

2014

Automatically exposing OpenLifeData via SADI semantic Web Services.

Alejandro Rodríguez González, Alison Callahan, José Cruz-Toledo, Adrian Garcia, Mikel Egaña Aranguren, Michel Dumontier, Mark D. Wilkinson

J. Biomed. Semant., 2014

The Semanticscience Integrated Ontology (SIO) for biomedical research and knowledge discovery.

Michel Dumontier, Christopher J. O. Baker, Joachim Baran, Alison Callahan, Leonid L. Chepelev, Jose Cruz-Toledo, Nicholas R. Del Rio, Geraint Duck, Laura Inés Furlong, Nichealla Keath, Dana Klassen, Jamie P. McCusker, Núria Queralt-Rosinach, Matthias Samwald, Natalia Villanueva-Rosales, Mark D. Wilkinson, Robert Hoehndorf

J. Biomed. Semant., 2014

Bio2RDF Release 3: A larger, more connected network of Linked Data for the Life Sciences.

Michel Dumontier, Alison Callahan, Jose Cruz-Toledo, Peter Ansell, Vincent Emonet, François Belleau, Arnaud Droit

Proceedings of the ISWC 2014 Posters & Demonstrations Track a track within the 13th International Semantic Web Conference, 2014

2013

1st Semantic Web Technologies for Libraries and Readers (STLR 2011).

Alison Callahan, Michel Dumontier, Jodi Schneider, Lars Svensson

Bull. IEEE Tech. Comm. Digit. Libr., 2013

Ovopub: Modular data publication with minimal provenance

Alison Callahan, Michel Dumontier

CoRR, 2013

Ontology-Based Querying with Bio2RDF's Linked Open Data.

Alison Callahan, Jose Cruz-Toledo, Michel Dumontier

J. Biomed. Semant., 2013

A Large-scale Gene-centric Semantic Web Knowledge Base for Molecular Biology.

Jose Cruz-Toledo, Alison Callahan, Michel Dumontier

Proceedings of the Informal Proceedings of the 2nd International Workshop on OWL Reasoner Evaluation (ORE-2013), 2013

HyQue: A Semantic Web tool for evaluating scientific hypotheses.

Alison Callahan, Michel Dumontier

Proceedings of the 4th International Conference on Biomedical Ontology, 2013

Bio2RDF Release 2: Improved Coverage, Interoperability and Provenance of Life Science Linked Data.

Alison Callahan, Jose Cruz-Toledo, Peter Ansell, Michel Dumontier

Proceedings of the Semantic Web: Semantics and Big Data, 10th International Conference, 2013

2012

Improved Dataset Coverage and Interoperability with Bio2RDF Release 2.

Alison Callahan, Jose Cruz-Toledo, Peter Ansell, Dana Klassen, Giovanni Tumarello, Michel Dumontier

Proceedings of the 5th International Workshop on Semantic Web Applications and Tools for Life Sciences, 2012

Evaluating Scientific Hypotheses Using the SPARQL Inferencing Notation.

Alison Callahan, Michel Dumontier

Proceedings of the Semantic Web: Research and Applications, 2012

2011

HyQue: evaluating hypotheses using Semantic Web technologies.

Alison Callahan, Michel Dumontier, Nigam H. Shah

J. Biomed. Semant., 2011

2010

Contextual cocitation: Augmenting cocitation analysis and its applications.

Alison Callahan, Stephen Hockema, Gunther Eysenbach

J. Assoc. Inf. Sci. Technol., 2010