Matthias Samwald

Orcid: 0000-0002-4855-2571

According to our database1, Matthias Samwald authored at least 86 papers between 2005 and 2024.

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Bibliography

2024
A comparison of chain-of-thought reasoning strategies across datasets and models.
PeerJ Comput. Sci., 2024

Model-agnostic explainable artificial intelligence for object detection in image data.
Eng. Appl. Artif. Intell., 2024

Exploring the landscape of large language models: Foundations, techniques, and challenges.
CoRR, 2024

GPT-4 as a biomedical simulator.
Comput. Biol. Medicine, 2024

2023
Applying unsupervised keyphrase methods on concepts extracted from discharge sheets.
Pattern Anal. Appl., November, 2023

Benchmark datasets driving artificial intelligence development fail to capture the needs of medical professionals.
J. Biomed. Informatics, January, 2023

A collection of principles for guiding and evaluating large language models.
CoRR, 2023

An automatically discovered chain-of-thought prompt generalizes to novel models and datasets.
CoRR, 2023

ThoughtSource: A central hub for large language model reasoning data.
CoRR, 2023

CSMeD: Bridging the Dataset Gap in Automated Citation Screening for Systematic Literature Reviews.
Proceedings of the Advances in Neural Information Processing Systems 36: Annual Conference on Neural Information Processing Systems 2023, 2023

2022
Relational local electroencephalography representations for sleep scoring.
Neural Networks, 2022

A study into patient similarity through representation learning from medical records.
Knowl. Inf. Syst., 2022

Improving the robustness and accuracy of biomedical language models through adversarial training.
J. Biomed. Informatics, 2022

BigBIO: A Framework for Data-Centric Biomedical Natural Language Processing.
CoRR, 2022

A global analysis of metrics used for measuring performance in natural language processing.
CoRR, 2022

Mapping global dynamics of benchmark creation and saturation in artificial intelligence.
CoRR, 2022

Deep Learning, Natural Language Processing, and Explainable Artificial Intelligence in the Biomedical Domain.
CoRR, 2022

LinkExplorer: predicting, explaining and exploring links in large biomedical knowledge graphs.
Bioinform., 2022


2021
Explaining Black-Box Models for Biomedical Text Classification.
IEEE J. Biomed. Health Informatics, 2021

Post-hoc explanation of black-box classifiers using confident itemsets.
Expert Syst. Appl., 2021

A curated, ontology-based, large-scale knowledge graph of artificial intelligence tasks and benchmarks.
CoRR, 2021

GPT-3 Models are Poor Few-Shot Learners in the Biomedical Domain.
CoRR, 2021

Deep learning models are not robust against noise in clinical text.
CoRR, 2021

Evaluating the Robustness of Neural Language Models to Input Perturbations.
Proceedings of the 2021 Conference on Empirical Methods in Natural Language Processing, 2021

SAFRAN: An interpretable, rule-based link prediction method outperforming embedding models.
Proceedings of the 3rd Conference on Automated Knowledge Base Construction, 2021

2020
Benchmarking neural embeddings for link prediction in knowledge graphs under semantic and structural changes.
J. Web Semant., 2020

Summarization of biomedical articles using domain-specific word embeddings and graph ranking.
J. Biomed. Informatics, 2020

Scalable and interpretable rule-based link prediction for large heterogeneous knowledge graphs.
CoRR, 2020

Explaining black-box text classifiers for disease-treatment information extraction.
CoRR, 2020

A critical analysis of metrics used for measuring progress in artificial intelligence.
CoRR, 2020

Deep contextualized embeddings for quantifying the informative content in biomedical text summarization.
Comput. Methods Programs Biomed., 2020

OpenBioLink: a benchmarking framework for large-scale biomedical link prediction.
Bioinform., 2020

Dividing the Ontology Alignment Task with Semantic Embeddings and Logic-Based Modules.
Proceedings of the ECAI 2020 - 24th European Conference on Artificial Intelligence, 29 August-8 September 2020, Santiago de Compostela, Spain, August 29 - September 8, 2020, 2020

2019
Dividing the Ontology Alignment Task.
Dataset, November, 2019

OpenBioLink: A resource and benchmarking framework for large-scale biomedical link prediction.
CoRR, 2019

Clustering of Deep Contextualized Representations for Summarization of Biomedical Texts.
CoRR, 2019

Neural sentence embedding models for semantic similarity estimation in the biomedical domain.
BMC Bioinform., 2019

Using hyperbolic large-margin classifiers for biological link prediction.
Proceedings of the 5th Workshop on Semantic Deep Learning, 2019

2018
Dividing the Ontology Alignment Task.
Dataset, April, 2018

Implementing pharmacogenomics decision support across seven European countries: The Ubiquitous Pharmacogenomics (U-PGx) project.
J. Am. Medical Informatics Assoc., 2018

Breaking-down the Ontology Alignment Task with a Lexical Index and Neural Embeddings.
CoRR, 2018

Fast and scalable neural embedding models for biomedical sentence classification.
BMC Bioinform., 2018

We divide, you conquer: from large-scale ontology alignment to manageable subtasks with a lexical index and neural embeddings.
Proceedings of the 13th International Workshop on Ontology Matching co-located with the 17th International Semantic Web Conference, 2018

Global and Local Evaluation of Link Prediction Tasks with Neural Embeddings.
Proceedings of the Joint proceedings of the 4th Workshop on Semantic Deep Learning (SemDeep-4) and NLIWoD4: Natural Language Interfaces for the Web of Data (NLIWOD-4) and 9th Question Answering over Linked Data challenge (QALD-9) co-located with 17th International Semantic Web Conference (ISWC 2018), Monterey, California, United States of America, October 8th, 2018

Fast and Scalable Learning of Neuro-Symbolic Representations of Biomedical Knowledge.
Proceedings of the First Workshop on Deep Learning for Knowledge Graphs and Semantic Technologies (DL4KGS) co-located with the 15th Extended Semantic Web Conerence (ESWC 2018), 2018

Effects of Medical Device Regulations on the Development of Stand-Alone Medical Software: A Pilot Study.
Proceedings of the Health Informatics Meets eHealth - Biomedical Meets eHealth - From Sensors to Decisions, 2018

2017
The Importance of Gene-Drug-Drug-Interactions in Pharmacogenomics Decision Support: An Analysis Based on Austrian Claims Data.
Proceedings of the Health Informatics Meets eHealth - Digital Insight - Information-Driven Health & Care, 2017

2016
How Many Patients Could Benefit From Pre-emptive Pharmacogenomic Testing and Decision Support? A Retrospective Study Based on Nationwide Austrian Claims Data.
Proceedings of the Health Informatics Meets eHealth - Predictive Modeling in Healthcare - From Prediction to Prevention, 2016

2015
Pharmacogenomic knowledge representation, reasoning and genome-based clinical decision support based on OWL 2 DL ontologies.
BMC Medical Informatics Decis. Mak., 2015

Toward a complete dataset of drug-drug interaction information from publicly available sources.
J. Biomed. Informatics, 2015

Applying deep learning techniques on medical corpora from the World Wide Web: a prototypical system and evaluation.
CoRR, 2015

2014
The Semanticscience Integrated Ontology (SIO) for biomedical research and knowledge discovery.
J. Biomed. Semant., 2014

An Update on Genomic CDS, a Complex Ontology for Pharmacogenomics and Clinical Decision Support.
Proceedings of the Informal Proceedings of the 3rd International Workshop on OWL Reasoner Evaluation (ORE 2014) co-located with the Vienna Summer of Logic (VSL 2014), 2014

An Open-Source, Mobile-Friendly Search Engine for Public Medical Knowledge.
Proceedings of the e-Health - For Continuity of Care - Proceedings of MIE2014, the 25th European Medical Informatics Conference, Istanbul, Turkey, August 31, 2014

Exploring the Application of Deep Learning Techniques on Medical Text Corpora.
Proceedings of the e-Health - For Continuity of Care - Proceedings of MIE2014, the 25th European Medical Informatics Conference, Istanbul, Turkey, August 31, 2014

Visualising topic networks in infection control using word vector analysis.
Proceedings of the e-Health - For Continuity of Care - Proceedings of MIE2014, the 25th European Medical Informatics Conference, Istanbul, Turkey, August 31, 2014

Towards a Global IT System for Personalized Medicine: the Medicine Safety Code Initiative.
Proceedings of the Health Informatics Meets eHealth, 2014

2013
Pharmacogenomics in the pocket of every patient? A prototype based on quick response codes.
J. Am. Medical Informatics Assoc., 2013

Genomic CDS: an Example of a Complex Ontology for Pharmacogenetics and Clinical Decision Support.
Proceedings of the Informal Proceedings of the 2nd International Workshop on OWL Reasoner Evaluation (ORE-2013), 2013

Physicians searching the web for medical question answering: A European survey and local user studies.
Proceedings of the MEDINFO 2013, 2013

An RDF/OWL Knowledge Base for Query Answering and Decision Support in Clinical Pharmacogenetics.
Proceedings of the MEDINFO 2013, 2013


A Formative Evaluation of a Comprehensive Search System for Medical Professionals.
Proceedings of the Information Access Evaluation. Multilinguality, Multimodality, and Visualization, 2013

2012
Emerging practices for mapping and linking life sciences data using RDF - A case series.
J. Web Semant., 2012

The Arden Syntax standard for clinical decision support: Experiences and directions.
J. Biomed. Informatics, 2012

2011
Linked open drug data for pharmaceutical research and development.
J. Cheminformatics, 2011

The Translational Medicine Ontology and Knowledge Base: driving personalized medicine by bridging the gap between bench and bedside.
J. Biomed. Semant., 2011

Towards an Interoperable Information Infrastructure Providing Decision Support for Genomic Medicine.
Proceedings of the User Centered Networked Health Care - Proceedings of MIE 2011, 2011

2010
Establishing a distributed system for the simple representation and integration of diverse scientific assertions.
J. Biomed. Semant., 2010

Semantic SenseLab: Implementing the vision of the Semantic Web in neuroscience.
Artif. Intell. Medicine, 2010

Provenance of Microarray Experiments for a Better Understanding of Experiment Results.
Proceedings of the Second International Workshop on the role of Semantic Web in Provenance Management, 2010

2009
Das Semantic Web als Werkzeug in der biomedizinischen Forschung.
Proceedings of the Social Semantic Web: Web 2.0 - Was nun?, 2009

Federating Distributed Social Data to Build an Interlinked Online Information Society.
IEEE Intell. Syst., 2009

A journey to Semantic Web query federation in the life sciences.
BMC Bioinform., 2009

Life sciences on the Semantic Web: the Neurocommons and beyond.
Briefings Bioinform., 2009

Approaches to neuroscience data integration.
Briefings Bioinform., 2009

Entrez Neuron RDFa: A Pragmatic Semantic Web Application for Data Integration in Neuroscience Research.
Proceedings of the Medical Informatics in a United and Healthy Europe - Proceedings of MIE 2009, The XXIInd International Congress of the European Federation for Medical Informatics, Sarajevo, Bosnia and Herzegovina, August 30, 2009

Linking Open Drug Data.
Proceedings of the 5th International Conference on Semantic Systems, 2009

2008
The bio-zen plus ontology.
Appl. Ontology, 2008

Simplifying Access to Large-Scale Health Care and Life Sciences Datasets.
Proceedings of the Semantic Web: Research and Applications, 2008

KiWi - Knowledge in a Wiki.
Proceedings of the Poster Track of the 5th European Semantic Web Conference (ESWC2008) Tenerife (Spain), 01, 2008

Previewing Semantic Web Pipes.
Proceedings of the Semantic Web: Research and Applications, 2008

2007
Advancing translational research with the Semantic Web.
BMC Bioinform., 2007

Ontology-Based Data Integration For Biomedical Research.
Proceedings of the Semantic Web: Real-World Applications from Industry, 2007

2005
Bringing Neuroscience to the Semantic Web: The Semantic Synapse Project.
Proceedings of the 2005 International Conference on Computational Intelligence for Modelling Control and Automation (CIMCA 2005), 2005


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