Mark D. Wilkinson

According to our database1, Mark D. Wilkinson
  • authored at least 65 papers between 2001 and 2018.
  • has a "Dijkstra number"2 of four.

Timeline

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Bibliography

2018
On the convergence of soft potential dynamics to hard sphere dynamics.
Asymptotic Analysis, 2018

2017
Interoperability and FAIRness through a novel combination of Web technologies.
PeerJ PrePrints, 2017

Interoperability and FAIRness through a novel combination of Web technologies.
PeerJ Computer Science, 2017

Cloudy, increasingly FAIR; revisiting the FAIR Data guiding principles for the European Open Science Cloud.
Inf. Services and Use, 2017

The FAIRification of Data and the Potential of FAIR Resources Demonstrated, in Practice, at the Rome Bring Your Own Data Workshop.
Proceedings of the 10th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences (SWAT4LS 2017), 2017

2016
Interoperability and FAIRness through a novel combination of Web technologies.
PeerJ PrePrints, 2016

Registries of Domain-Relevant Semantic Reference Models Help Bootstrap Interoperability in Domains with Fragmented Data Resources.
Proceedings of the 9th International Conference Semantic Web Applications and Tools for Life Sciences, 2016

2015
OntoLoki: an automatic, instance-based method for the evaluation of biological ontologies on the Semantic Web.
CoRR, 2015

Erratum to: Diagnostic Knowledge Extraction from MedlinePlus: An Application for Infectious Diseases.
Proceedings of the 9th International Conference on Practical Applications of Computational Biology and Bioinformatics, 2015

Diagnostic Knowledge Extraction from MedlinePlus: An Application for Infectious Diseases.
Proceedings of the 9th International Conference on Practical Applications of Computational Biology and Bioinformatics, 2015

2014
Health Web Science.
Foundations and Trends in Web Science, 2014

Automatic annotation of bioinformatics workflows with biomedical ontologies.
CoRR, 2014

L.U.St: a tool for approximated maximum likelihood supertree reconstruction.
BMC Bioinformatics, 2014

BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains.
J. Biomedical Semantics, 2014

Automatically exposing OpenLifeData via SADI semantic Web Services.
J. Biomedical Semantics, 2014

The Semanticscience Integrated Ontology (SIO) for biomedical research and knowledge discovery.
J. Biomedical Semantics, 2014

Executing SADI services in Galaxy.
J. Biomedical Semantics, 2014

Bring Your Own Data Workshops: A Mechanism to Aid Data Owners to Comply with Linked Data Best Practices.
Proceedings of the 7th International Workshop on Semantic Web Applications and Tools for Life Sciences, 2014

Automatic Annotation of Bioinformatics Workflows with Biomedical Ontologies.
Proceedings of the Leveraging Applications of Formal Methods, Verification and Validation. Specialized Techniques and Applications, 2014

Nanopublishing Clinical Diagnoses: Tracking Diagnostic Knowledge Base Content and Utilization.
Proceedings of the 2014 IEEE 27th International Symposium on Computer-Based Medical Systems, 2014

2013
SHARE: A Web Service Based Framework for Distributed Querying and Reasoning on the Semantic Web
CoRR, 2013

OPPL-Galaxy, a Galaxy tool for enhancing ontology exploitation as part of bioinformatics workflows.
J. Biomedical Semantics, 2013

Plant Pathogen Interactions Ontology (PPIO).
Proceedings of the International Work-Conference on Bioinformatics and Biomedical Engineering, 2013

2012
Analysis of a Multilevel Diagnosis Decision Support System and Its Implications: A Case Study.
Comp. Math. Methods in Medicine, 2012

SPARQL Assist language-neutral query composer.
BMC Bioinformatics, 2012

Extending and encoding existing biological terminologies and datasets for use in the reasoned semantic web.
J. Biomedical Semantics, 2012

OWL-DL Domain-Models as Abstract Workflows.
Proceedings of the Leveraging Applications of Formal Methods, Verification and Validation. Applications and Case Studies, 2012

Bioscientific Data Processing and Modeling.
Proceedings of the Leveraging Applications of Formal Methods, Verification and Validation. Applications and Case Studies, 2012

2011
The Semantic Automated Discovery and Integration (SADI) Web service Design-Pattern, API and Reference Implementation.
J. Biomedical Semantics, 2011

The 2nd DBCLS BioHackathon: interoperable bioinformatics Web services for integrated applications.
J. Biomedical Semantics, 2011

The SADI plug-in to IO informatics' sentient knowledge explorer.
Proceedings of the 4th International Workshop on Semantic Web Applications and Tools for the Life Sciences, 2011

SADI for GMOD: Semantic Web Services for Model Organism Databases.
Proceedings of the 3rd Canadian Semantic Web Symposium (CSWS2011), 2011

2010
SPARQL Assist Language-Neutral Query Composer
CoRR, 2010

SADI, SHARE, and the in silico scientific method.
BMC Bioinformatics, 2010

The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows.
J. Biomedical Semantics, 2010

OWL2Perl: creating Perl modules from OWL class definitions.
Bioinformatics, 2010

SPARQL Assist Language-Neutral Query Composer.
Proceedings of the Workshop on Semantic Web Applications and Tools for Life Sciences, 2010

SHARE & The Semantic Web - This Time it's Personal!
Proceedings of the 7th International Workshop on OWL: Experiences and Directions (OWLED 2010), 2010

Semantically-Guided Workflow Construction in Taverna: The SADI and BioMoby Plug-Ins.
Proceedings of the Leveraging Applications of Formal Methods, Verification, and Validation, 2010

Tools in Scientific Workflow Composition.
Proceedings of the Leveraging Applications of Formal Methods, Verification, and Validation, 2010

2009
Biological Metadata Management.
Proceedings of the Encyclopedia of Database Systems, 2009

Biological Resource Discovery.
Proceedings of the Encyclopedia of Database Systems, 2009

Web Services and the Semantic Web for Life Science Data.
Proceedings of the Encyclopedia of Database Systems, 2009

Social tagging in the life sciences: characterizing a new metadata resource for bioinformatics.
BMC Bioinformatics, 2009

Moby and Moby 2: Creatures of the Deep (Web).
Briefings in Bioinformatics, 2009

Optimization of Distributed SPARQL Queries Using Edmonds' Algorithm and Prim's Algorithm.
Proceedings of the 12th IEEE International Conference on Computational Science and Engineering, 2009

SHARE: A Semantic Web Query Engine for Bioinformatics.
Proceedings of the Semantic Web, Fourth Asian Conference, 2009

SADI Semantic Web Services -- 'cause you can't always GET what you want!.
Proceedings of the 4th IEEE Asia-Pacific Services Computing Conference, 2009

2008
Semi-automatic web service composition for the life sciences using the BioMoby semantic web framework.
Journal of Biomedical Informatics, 2008

Structured Representation of Biomedical Experiments: A Bottom-Up Approach.
Proceedings of the 2008 International Conference on Information & Knowledge Engineering, 2008

2007
DataBiNS: a BioMoby-based data-mining workflow for biological pathways and non-synonymous SNPs.
Bioinformatics, 2007

Tag clouds for summarizing web search results.
Proceedings of the 16th International Conference on World Wide Web, 2007

Ontology engineering using volunteer labor.
Proceedings of the 16th International Conference on World Wide Web, 2007

From chaos to order: A generic, distributed, ontology based annotation system.
Proceedings of the 2007 International Conference on Information & Knowledge Engineering, 2007

Using a Novel Data Transformation Technique to Provide the EMBOSS Software Suite as Semantic Web Services.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2007

2006
Gbrowse Moby: a Web-based browser for BioMoby Services.
Source Code for Biology and Medicine, 2006

BioMoby extensions to the Taverna workflow management and enactment software.
BMC Bioinformatics, 2006

iHOPerator: user-scripting a personalized bioinformatics Web, starting with the iHOP website.
BMC Bioinformatics, 2006

The Life Sciences Semantic Web is Full of Creeps!
Briefings in Bioinformatics, 2006

Fast, Cheap and Out of Control: A Zero Curation Model for Ontology Development.
Proceedings of the Biocomputing 2006, 2006

2004
Applying Semantic Web Services to Bioinformatics: Experiences Gained, Lessons Learnt.
Proceedings of the Semantic Web, 2004

2002
Genquire: genome annotation browser/editor.
Bioinformatics, 2002

BioMOBY: An Open Source Biological Web Services Proposal.
Briefings in Bioinformatics, 2002

2001
Reduced consensus.
Proceedings of the Bioconsensus, 2001

A view of supertree methods.
Proceedings of the Bioconsensus, 2001


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