Raheleh Salari

According to our database, Raheleh Salari authored at least 16 papers between 2007 and 2014.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2014

Fast and Scalable Inference of Multi-Sample Cancer Lineages.

Victoria Popic, Raheleh Salari, Iman Hajirasouliha, Dorna Kashef Haghighi, Robert B. West, Serafim Batzoglou

CoRR, 2014

2013

Inference of Tumor Phylogenies with Improved Somatic Mutation Discovery.

Raheleh Salari, Syed Shayon Saleh, Dorna Kashef Haghighi, David Khavari, Daniel E. Newburger, Robert B. West, Arend Sidow, Serafim Batzoglou

J. Comput. Biol., 2013

Module Cover - A New Approach to Genotype-Phenotype Studies.

Yoo-Ah Kim, Raheleh Salari, Stefan Wuchty, Teresa M. Przytycka

Proceedings of the Biocomputing 2013: Proceedings of the Pacific Symposium, 2013

2012

Teasing Apart Translational and Transcriptional Components of Stochastic Variations in Eukaryotic Gene Expression.

Raheleh Salari, Damian Wójtowicz, Jie Zheng, David Levens, Yitzhak Pilpel, Teresa M. Przytycka

PLoS Comput. Biol., 2012

Detecting SNP-Induced Structural Changes in RNA: Application to Disease Studies.

Raheleh Salari, Chava Kimchi-Sarfaty, Michael M. Gottesman, Teresa M. Przytycka

Proceedings of the Research in Computational Molecular Biology, 2012

2010

Towards Improved Assessment of Functional Similarity in Large-Scale Screens: A Study on Indel Length.

Alexander Schönhuth, Raheleh Salari, Fereydoun Hormozdiari, Artem Cherkasov, Süleyman Cenk Sahinalp

J. Comput. Biol., 2010

Protein-Protein Interaction Network Evaluation for Identifying Potential Drug Targets.

Fereydoun Hormozdiari, Raheleh Salari, Vineet Bafna, Süleyman Cenk Sahinalp

J. Comput. Biol., 2010

Inferring cancer subnetwork markers using density-constrained biclustering.

Phuong Dao, Recep Colak, Raheleh Salari, Flavia Moser, Elai Davicioni, Alexander Schönhuth, Martin Ester

Bioinform., 2010

Fast prediction of RNA-RNA interaction.

Raheleh Salari, Rolf Backofen, Süleyman Cenk Sahinalp

Algorithms Mol. Biol., 2010

Sparsification of RNA structure prediction including pseudoknots.

Mathias Möhl, Raheleh Salari, Sebastian Will, Rolf Backofen, Süleyman Cenk Sahinalp

Algorithms Mol. Biol., 2010

Pair HMM Based Gap Statistics for Re-evaluation of Indels in Alignments with Affine Gap Penalties.

Alexander Schönhuth, Raheleh Salari, Süleyman Cenk Sahinalp

Proceedings of the Algorithms in Bioinformatics, 10th International Workshop, 2010

Time and Space Efficient RNA-RNA Interaction Prediction via Sparse Folding.

Raheleh Salari, Mathias Möhl, Sebastian Will, Süleyman Cenk Sahinalp, Rolf Backofen

Proceedings of the Research in Computational Molecular Biology, 2010

2009

The Effect of Insertions and Deletions on Wirings in Protein-Protein Interaction Networks: A Large-Scale Study.

Fereydoun Hormozdiari, Raheleh Salari, Michael Hsing, Alexander Schönhuth, Simon K. Chan, Süleyman Cenk Sahinalp, Artem Cherkasov

J. Comput. Biol., 2009

A partition function algorithm for interacting nucleic acid strands.

Hamidreza Chitsaz, Raheleh Salari, Süleyman Cenk Sahinalp, Rolf Backofen

Bioinform., 2009

2008

The Relation between Indel Length and Functional Divergence: A Formal Study.

Raheleh Salari, Alexander Schönhuth, Fereydoun Hormozdiari, Artem Cherkasov, Süleyman Cenk Sahinalp

Proceedings of the Algorithms in Bioinformatics, 8th International Workshop, 2008

2007

taveRNA: a web suite for RNA algorithms and applications.

Cagri Aksay, Raheleh Salari, Emre Karakoç, Can Alkan, Süleyman Cenk Sahinalp

Nucleic Acids Res., 2007