According to our database1, Anshul Kundaje authored at least 18 papers between 2004 and 2018.
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GenomeDISCO: a concordance score for chromosome conformation capture experiments using random walks on contact map graphs.
Discovering epistatic feature interactions from neural network models of regulatory DNA sequences.
Prediction of protein-ligand interactions from paired protein sequence motifs and ligand substructures.
Proceedings of the Biocomputing 2018: Proceedings of the Pacific Symposium, 2018
Vicus: Exploiting local structures to improve network-based analysis of biological data.
PLoS Computational Biology, 2017
Denoising genome-wide histone ChIP-seq with convolutional neural networks.
Learning Important Features Through Propagating Activation Differences.
Proceedings of the 34th International Conference on Machine Learning, 2017
Unsupervised Learning from Noisy Networks with Applications to Hi-C Data.
Proceedings of the Advances in Neural Information Processing Systems 29: Annual Conference on Neural Information Processing Systems 2016, 2016
Integrative analysis of 111 reference human epigenomes Open.
Comparative analysis of metazoan chromatin organization Open.
Comparative analysis of regulatory information and circuits across distant species Open.
Clustering reveals ubiquitous heterogeneity and asymmetry of genomic signals at functional elements.
A Predictive Model of the Oxygen and Heme Regulatory Network in Yeast.
PLoS Computational Biology, 2008
A classification-based framework for predicting and analyzing gene regulatory response.
BMC Bioinformatics, 2006
Combining Sequence and Time Series Expression Data to Learn Transcriptional Modules.
IEEE/ACM Trans. Comput. Biology Bioinform., 2005
Motif Discovery Through Predictive Modeling of Gene Regulation.
Proceedings of the Research in Computational Molecular Biology, 2005
Spectrogram Analysis of Genomes.
EURASIP J. Adv. Sig. Proc., 2004
Predicting Genetic Regulatory Response Using Classification: Yeast Stress Response.
Proceedings of the Regulatory Genomics, 2004
Predicting genetic regulatory response using classification.
Proceedings of the Proceedings Twelfth International Conference on Intelligent Systems for Molecular Biology/Third European Conference on Computational Biology 2004, 2004