Björn Usadel

According to our database, Björn Usadel authored at least 19 papers between 2004 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2023

FAIRagro: Ein Konsortium in der Nationalen Forschungsdateninfrastruktur (NFDI) für Forschungsdaten in der Agrosystemforschung.

Xenia Specka, Daniel Martini, Claus Weiland, Daniel Arend, Senthold Asseng, Franziska Boehm, Til Feike, Juliane Fluck, David Gackstetter, Aida Gonzales-Mellado, Thomas Hartmann, Jan-Henrik Haunert, Florian Hoedt, Carsten Hoffmann, Patrick König, Matthias Lange, Stephan Lesch, Birte Lindstädt, Gunnar Lischeid, Markus Möller, Uwe Rascher, Jochen Christoph Reif, Markus Schmalzl, Matthias Senft, Ulrike Stahl, Nikolai Svoboda, Björn Usadel, Heidi Webber, Frank Ewert

Inform. Spektrum, February, 2023

DataPLAN: A Web-Based Data Management Plan Generator for the Plant Sciences.

Xiao-Ran Zhou, Sebastian Beier, Dominik Brilhaus, Cristina Martins Rodrigues, Timo Mühlhaus, Dirk von Suchodoletz, Richard M. Twyman, Björn Usadel, Angela Kranz

Data, 2023

Ontologies for increasing the FAIRness of plant research data.

Kathryn Dumschott, Hannah Dörpholz, Marie-Angélique Laporte, Dominik Brilhaus, Andrea Schrader, Björn Usadel, Steffen Neumann, Elizabeth Arnaud, Angela Kranz

CoRR, 2023

2019

The de.NBI / ELIXIR-DE training platform - Bioinformatics training in Germany and across Europe within ELIXIR.

Daniel Wibberg, Bérénice Batut, Peter Belmann, Jochen Blom, Frank Oliver Glöckner, Björn A. Grüning, Nils Hoffmann, Nils Kleinbölting, René Rahn, Maja Rey, Uwe Scholz, Malvika Sharan, Andreas Tauch, Ulrike Trojahn, Björn Usadel, Oliver Kohlbacher

F1000Research, 2019

2018

Plant genome and transcriptome annotations: from misconceptions to simple solutions.

Marie E. Bolger, Borjana Arsova, Björn Usadel

Briefings Bioinform., 2018

2015

PAGANtec: OpenMP Parallel Error Correction for Next-Generation Sequencing Data.

Markus Joppich, Dirk Schmidl, Anthony M. Bolger, Torsten W. Kuhlen, Björn Usadel

Proceedings of the OpenMP: Heterogenous Execution and Data Movements, 2015

Mapping a database schema to the structure of an existing ontology.

Anahita Nafissi, Fabio Fiorani, Björn Usadel

Proceedings of the International Conference on Biomedical Ontology, 2015

2014

GoMapMan: integration, consolidation and visualization of plant gene annotations within the MapMan ontology.

Ziva Ramsak, Spela Baebler, Ana Rotter, Matej Korbar, Igor Mozetic, Björn Usadel, Kristina Gruden

Nucleic Acids Res., 2014

Trimmomatic: a flexible trimmer for Illumina sequence data.

Anthony M. Bolger, Marc Lohse, Björn Usadel

Bioinform., 2014

2013

The NGS WikiBook: a dynamic collaborative online training effort with long-term sustainability.

Jing-Woei Li, Dan M. Bolser, Magnus Manske, Federico Manuel Giorgi, Nikolay Vyahhi, Björn Usadel, Bernardo J. Clavijo, Ting-Fung Chan, Nathalie Wong, Daniel R. Zerbino, Maria Victoria Schneider

Briefings Bioinform., 2013

2012

<i>R</i>obi<i>NA</i>: a user-friendly, integrated software solution for RNA-Seq-based transcriptomics.

Marc Lohse, Anthony M. Bolger, Axel Nagel, Alisdair R. Fernie, John E. Lunn, Mark Stitt, Björn Usadel

Nucleic Acids Res., 2012

The SEQanswers wiki: a wiki database of tools for high-throughput sequencing analysis.

Jing-Woei Li, Keith Robison, Marcel Martin, Andreas Sjödin, Björn Usadel, Matthew Young, Eric C. Olivares, Dan M. Bolser

Nucleic Acids Res., 2012

2011

Visualizing large, high-throughput datasets based on the cognitive representation of biological pathways.

Axel Nagel, Marc Lohse, Anthony M. Bolger, Mark Stitt, Björn Usadel

Proceedings of the Human Vision and Electronic Imaging XVI, 2011

2010

Algorithm-driven Artifacts in median polish summarization of Microarray data.

Federico M. Giorgi, Anthony M. Bolger, Marc Lohse, Björn Usadel

BMC Bioinform., 2010

2008

Detecting Inconsistencies in Large Biological Networks with Answer Set Programming.

Martin Gebser, Torsten Schaub, Sven Thiele, Björn Usadel, Philippe Veber

Proceedings of the Logic Programming, 24th International Conference, 2008

2007

Correlation-maximizing surrogate gene space for visual mining of gene expression patterns in developing barley endosperm tissue.

Marc Strickert, Nese Sreenivasulu, Björn Usadel, Udo Seiffert

BMC Bioinform., 2007

2006

PageMan: An interactive ontology tool to generate, display, and annotate overview graphs for profiling experiments.

Björn Usadel, Axel Nagel, Dirk Steinhauser, Yves Gibon, Oliver E. Bläsing, Henning Redestig, Nese Sreenivasulu, Leonard Krall, Matthew A. Hannah, Fabien Poree, Alisdair R. Fernie, Mark Stitt

BMC Bioinform., 2006

2005

[e-mail]: the Golm Metabolome Database.

Joachim Kopka, Nicolas Schauer, Stephan Krueger, Claudia Birkemeyer, Björn Usadel, Eveline Bergmüller, Peter Dörmann, Wolfram Weckwerth, Yves Gibon, Mark Stitt, Lothar Willmitzer, Alisdair R. Fernie, Dirk Steinhauser

Bioinform., 2005

2004

CSB.DB: a comprehensive systems-biology database.

Dirk Steinhauser, Björn Usadel, Alexander Lüdemann, Oliver Thimm, Joachim Kopka

Bioinform., 2004