Kristina Gruden

According to our database, Kristina Gruden authored at least 19 papers between 2010 and 2023.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2023

DDeMON: Ontology-based function prediction by Deep Learning from Dynamic Multiplex Networks.

Jan Kralj, Blaz Skrlj, Ziva Ramsak, Nada Lavrac, Kristina Gruden

CoRR, 2023

2022

PaintOmics 4: new tools for the integrative analysis of multi-omics datasets supported by multiple pathway databases.

Tianyuan Liu, Pedro Salguero, Marko Petek, Carlos Martínez-Mira, Leandro Balzano-Nogueira, Ziva Ramsak, Lauren McIntyre, Kristina Gruden, Sonia Tarazona, Ana Conesa

Nucleic Acids Res., 2022

2020

The need for standardisation in life science research - an approach to excellence and trust.

Susanne Hollmann, Andreas Kremer, Spela Baebler, Christophe Trefois, Kristina Gruden, Witold R. Rudnicki, Weida Tong, Aleksandra Gruca, Erik Bongcam-Rudloff, Chris T. A. Evelo, Alina S. Nechyporenko, Marcus Frohme, David Safránek, Babette Regierer, Domenica D'Elia

F1000Research, 2020

2019

Discovery of Relevant Response in Infected Potato Plants from Time Series of Gene Expression Data.

Dragan Gamberger, Tjasa Stare, Dragana Miljkovic, Kristina Gruden, Nada Lavrac

Mach. Learn. Knowl. Extr., 2019

Interactive exploration of heterogeneous biological networks with Biomine Explorer.

Vid Podpecan, Ziva Ramsak, Kristina Gruden, Hannu Toivonen, Nada Lavrac

Bioinform., 2019

2017

quantGenius: implementation of a decision support system for qPCR-based gene quantification.

Spela Baebler, Miha Svalina, Marko Petek, Katja Stare, Ana Rotter, Marusa Pompe-Novak, Kristina Gruden

BMC Bioinform., 2017

2014

GoMapMan: integration, consolidation and visualization of plant gene annotations within the MapMan ontology.

Ziva Ramsak, Spela Baebler, Ana Rotter, Matej Korbar, Igor Mozetic, Björn Usadel, Kristina Gruden

Nucleic Acids Res., 2014

Plant defence model revisions through iterative minimisation of constraint violations.

Dragana Miljkovic, Matjaz Depolli, Tjasa Stare, Igor Mozetic, Marko Petek, Kristina Gruden, Nada Lavrac

Int. J. Comput. Biol. Drug Des., 2014

GMOseek: a user friendly tool for optimized GMO testing.

Dany Morisset, Petra Kralj Novak, Darko Zupanic, Kristina Gruden, Nada Lavrac, Jana Zel

BMC Bioinform., 2014

2013

Contrasting Subgroup Discovery.

Laura Langohr, Vid Podpecan, Marko Petek, Igor Mozetic, Kristina Gruden, Nada Lavrac, Hannu Toivonen

Comput. J., 2013

The GMOseek matrix: a decision support tool for optimizing the detection of genetically modified plants.

Annette Block, Frédéric Debode, Lutz Grohmann, Julie Hulin, Isabel Taverniers, Linda Kluga, Elodie Barbau-Piednoir, Sylvia Broeders, Ingrid Huber, Marc Van den Bulcke, Petra Heinze, Gilbert Berben, Ulrich Busch, Nancy Roosens, Eric Janssen, Jana Zel, Kristina Gruden, Dany Morisset

BMC Bioinform., 2013

Incremental revision of biological networks from texts.

Dragana Miljkovic, Vid Podpecan, Tjasa Stare, Igor Mozetic, Kristina Gruden, Nada Lavrac

Proceedings of the International Work-Conference on Bioinformatics and Biomedical Engineering, 2013

Integrating semantic transcriptomic data analysis and knowledge extraction from biological literature.

Vid Podpecan, Dragana Miljkovic, Marko Petek, Tjasa Stare, Kristina Gruden, Igor Mozetic, Nada Lavrac

Proceedings of the 2013 IEEE International Conference on Bioinformatics and Biomedicine, 2013

2012

Semantic Subgroup Discovery and Cross-Context Linking for Microarray Data Analysis.

Igor Mozetic, Nada Lavrac, Vid Podpecan, Petra Kralj Novak, Helena Motaln, Marko Petek, Kristina Gruden, Hannu Toivonen, Kimmo Kulovesi

Proceedings of the Bisociative Knowledge Discovery, 2012

Modelling a Biological System: Network Creation by Triplet Extraction from Biological Literature.

Dragana Miljkovic, Vid Podpecan, Miha Grcar, Kristina Gruden, Tjasa Stare, Marko Petek, Igor Mozetic, Nada Lavrac

Proceedings of the Bisociative Knowledge Discovery, 2012

Contrast Mining from Interesting Subgroups.

Laura Langohr, Vid Podpecan, Marko Petek, Igor Mozetic, Kristina Gruden

Proceedings of the Bisociative Knowledge Discovery, 2012

Constraint-driven optimization of plant defense model parameters.

Dragana Miljkovic, Matjaz Depolli, Igor Mozetic, Nada Lavrac, Tjasa Stare, Marko Petek, Kristina Gruden

Proceedings of the 2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2012

2011

SegMine workflows for semantic microarray data analysis in Orange4WS.

Vid Podpecan, Nada Lavrac, Igor Mozetic, Petra Kralj Novak, Igor Trajkovski, Laura Langohr, Kimmo Kulovesi, Hannu Toivonen, Marko Petek, Helena Motaln, Kristina Gruden

BMC Bioinform., 2011

2010

Bisociative Knowledge Discovery for Microarray Data Analysis.

Igor Mozetic, Nada Lavrac, Vid Podpecan, Petra Kralj Novak, Helena Motaln, Marko Petek, Kristina Gruden, Hannu Toivonen, Kimmo Kulovesi

Proceedings of the International Conference on Computational Creativity, 2010