Oliver Kohlbacher
Orcid: 0000-0003-1739-4598Affiliations:
- University of Tübingen, Germany
According to our database1,
Oliver Kohlbacher
authored at least 132 papers
between 1999 and 2023.
Collaborative distances:
Collaborative distances:
Timeline
Legend:
Book In proceedings Article PhD thesis Dataset OtherLinks
Online presence:
-
on zbmath.org
-
on twitter.com
-
on orcid.org
-
on d-nb.info
On csauthors.net:
Bibliography
2023
UmetaFlow: an untargeted metabolomics workflow for high-throughput data processing and analysis.
J. Cheminformatics, December, 2023
The personalized cancer network explorer (PeCaX) as a visual analytics tool to support molecular tumor boards.
BMC Bioinform., December, 2023
Proceedings of the 1st Conference on Research Data Infrastructure - Connecting Communities, 2023
2022
De novo identification of maximally deregulated subnetworks based on multi-omics data with DeRegNet.
BMC Bioinform., December, 2022
Bringing the Algorithms to the Data - Secure Distributed Medical Analytics using the Personal Health Train (PHT-meDIC).
CoRR, 2022
Proceedings of the Challenges of Trustable AI and Added-Value on Health, 2022
2021
2020
Data Intell., 2020
J. Biomed. Semant., 2020
2019
The de.NBI / ELIXIR-DE training platform - Bioinformatics training in Germany and across Europe within ELIXIR.
F1000Research, 2019
ClinOmicsTrailbc: a visual analytics tool for breast cancer treatment stratification.
Bioinform., 2019
Proceedings of the 19th IEEE/ACM International Symposium on Cluster, 2019
Proceedings of the 19th IEEE/ACM International Symposium on Cluster, 2019
Proceedings of the AMIA 2019, 2019
2018
PLoS Comput. Biol., 2018
Proceedings of the 11th International Conference Semantic Web Applications and Tools for Life Sciences, 2018
Proceedings of the Data Integration in the Life Sciences - 13th International Conference, 2018
Proceedings of the Data Integration in the Life Sciences - 13th International Conference, 2018
2017
PeerJ Prepr., 2017
BMC Bioinform., 2017
SANDPUMA: ensemble predictions of nonribosomal peptide chemistry reveal biosynthetic diversity across Actinobacteria.
Bioinform., 2017
Efficient Mass Spectra Prediction through Container Orchestration with a Scientific Workflow.
Proceedings of the 9th International Workshop on Science Gateways, 2017
Scaling home automation to public buildings: A distributed multiuser setup for OpenHAB 2.
Proceedings of the Global Internet of Things Summit, 2017
2016
PLoS Comput. Biol., 2016
PeerJ Prepr., 2016
BMC Bioinform., 2016
Bioinform., 2016
2015
it Inf. Technol., 2015
Protein (multi-)location prediction: utilizing interdependencies via a generative model.
Bioinform., 2015
2014
J. Chem. Inf. Model., 2014
Bioinform., 2014
Proceedings of the IEEE Pacific Visualization Symposium, 2014
2013
On Comparison of SimTandem with State-of-the-Art Peptide Identification Tools, Efficiency of Precursor Mass Filter and Dealing with Variable Modifications.
J. Integr. Bioinform., 2013
Development of a pharmacorphore model for pharmacological chaperones targeting mutant trafficking-deficient CNG channels.
J. Cheminformatics, 2013
The MoSGrid - e-science gateway: molecular simulations in a distributed computing environment.
J. Cheminformatics, 2013
A Statistical Comparison of SimTandem with State-of-the-Art Peptide Identification Tools.
Proceedings of the 7th International Conference on Practical Applications of Computational Biology & Bioinformatics, 2013
Proceedings of the 5th International Workshop on Science Gateways, 2013
Proceedings of the Multivariate Network Visualization, 2013
Proceedings of the Multivariate Network Visualization, 2013
2012
J. Cheminformatics, 2012
MoSGrid: efficient data management and a standardized data exchange format for molecular simulations in a grid environment.
J. Cheminformatics, 2012
A Single Sign-On Infrastructure for Science Gateways on a Use Case for Structural Bioinformatics.
J. Grid Comput., 2012
Workflow-enhanced conformational analysis of guanidine zinc complexes via a science gateway.
Proceedings of the HealthGrid Applications and Technologies Meet Science Gateways for Life Sciences, 2012
miHA-match: computational detection of tissue-specific minor histocompatibility antigens.
Proceedings of the ACM International Conference on Bioinformatics, 2012
2011
Nucleic Acids Res., 2011
J. Cheminformatics, 2011
MoSGrid - a molecular simulation grid as a new tool in computational chemistry, biology and material science.
J. Cheminformatics, 2011
Special Issue: Portals for life sciences - Providing intuitive access to bioinformatic tools.
Concurr. Comput. Pract. Exp., 2011
POPISK: T-cell reactivity prediction using support vector machines and string kernels.
BMC Bioinform., 2011
Proceedings of the 3rd International Workshop on Science Gateways for Life Sciences, 2011
Proceedings of the ACM International Conference on Bioinformatics, 2011
2010
Combining Structure and Sequence Information Allows Automated Prediction of Substrate Specificities within Enzyme Families.
PLoS Comput. Biol., 2010
Nucleic Acids Res., 2010
Going from where to why - interpretable prediction of protein subcellular localization.
Bioinform., 2010
Proceedings of the Software Engineering 2010, 2010
Proceedings of the Pattern Recognition in Bioinformatics, 2010
Graphlet Data Mining of Energetical Interaction Patterns in Protein 3D Structures.
Proceedings of the ICFC-ICNC 2010, 2010
Proceedings of the 10th IEEE/ACM International Conference on Cluster, 2010
Proceedings of the Proteome Bioinformatics, 2010
2009
OptiTope - a web server for the selection of an optimal set of peptides for epitope-based vaccines.
Nucleic Acids Res., 2009
Modeling metabolic networks in C. glutamicum: a comparison of rate laws in combination with various parameter optimization strategies.
BMC Syst. Biol., 2009
BMC Bioinform., 2009
MultiLoc2: integrating phylogeny and Gene Ontology terms improves subcellular protein localization prediction.
BMC Bioinform., 2009
A novel algorithm for detecting differentially regulated paths based on gene set enrichment analysis.
Bioinform., 2009
Proceedings of the International Workshop on Portals for Life Sciences, 2009
Proceedings of the Graph Drawing, 17th International Symposium, 2009
Proceedings of the Efficient Algorithms, 2009
2008
A Mathematical Framework for the Selection of an Optimal Set of Peptides for Epitope-Based Vaccines.
PLoS Comput. Biol., 2008
J. Chem. Inf. Model., 2008
Using Atom Mapping Rules for an Improved Detection of Relevant Routes in Weighted Metabolic Networks.
J. Comput. Biol., 2008
Peak intensity prediction in MALDI-TOF mass spectrometry: A machine learning study to support quantitative proteomics.
BMC Bioinform., 2008
BMC Bioinform., 2008
BMC Bioinform., 2008
GeneTrailExpress: a web-based pipeline for the statistical evaluation of microarray experiments.
BMC Bioinform., 2008
MetaRoute: fast search for relevant metabolic routes for interactive network navigation and visualization.
Bioinform., 2008
Proceedings of the Algorithms in Bioinformatics, 8th International Workshop, 2008
Proceedings of the Computational Proteomics, 02.03. - 07.03.2008, 2008
08191 Executive Summary - Graph Drawing with Applications to Bioinformatics and Social Sciences.
Proceedings of the Graph Drawing with Applications to Bioinformatics and Social Sciences, 04.05., 2008
08191 Abstracts Collection - Graph Drawing with Applications to Bioinformatics and Social Sciences.
Proceedings of the Graph Drawing with Applications to Bioinformatics and Social Sciences, 04.05., 2008
Proceedings of the Graph Drawing with Applications to Bioinformatics and Social Sciences, 04.05., 2008
2007
BMC Syst. Biol., 2007
Statistical learning of peptide retention behavior in chromatographic separations: a new kernel-based approach for computational proteomics.
BMC Bioinform., 2007
SherLoc: high-accuracy prediction of protein subcellular localization by integrating text and protein sequence data.
Bioinform., 2007
Bioinform., 2007
Proceedings of the German Conference on Bioinformatics, 2007
2006
J. Chem. Inf. Model., 2006
J. Chem. Inf. Model., 2006
MultiLoc: prediction of protein subcellular localization using N-terminal targeting sequences, sequence motifs and amino acid composition.
Bioinform., 2006
Proceedings of the Biocomputing 2006, 2006
Significantly Improved Prediction of Subcellular Localization by Integrating Text and Protein Sequence Data .
Proceedings of the Biocomputing 2006, 2006
2005
J. Comput. Aided Mol. Des., 2005
Proceedings of the Pattern Recognition and Data Mining, 2005
Using N-terminal targeting sequences, amino acid composition, and sequence motifs for predicting protein subcellular localizations.
Proceedings of the German Conference on Bioinformatics (GCB 2005), Hamburg, 2005
Proceedings of the Computational Proteomics, 20.-25. November 2005, 2005
Proceedings of the Computational Proteomics, 20.-25. November 2005, 2005
Proceedings of the Computational Proteomics, 20.-25. November 2005, 2005
Proceedings of the Computational Proteomics, 20.-25. November 2005, 2005
Proceedings of the Computational Proteomics, 20.-25. November 2005, 2005
Algorithms for the Automated Absolute Quantification of Diagnostic Markers in Complex Proteomics Samples.
Proceedings of the Computational Life Sciences, First International Symposium, 2005
2004
Differenzielle Proteomanalyse - Experimentelle Methoden, algorithmische Herausforderungen (Differential Analysis in Proteomics: Experimental Methods, Algorithmic Challenges).
it Inf. Technol., 2004
2003
Proceedings of the 2nd IEEE Computer Society Bioinformatics Conference, 2003
2002
J. Comput. Biol., 2002
BioMiner - modeling, analyzing, and visualizing biochemical pathways and networks.
Proceedings of the European Conference on Computational Biology (ECCB 2002), 2002
2001
Proceedings of the Fifth Annual International Conference on Computational Biology, 2001
Proceedings of the IEEE 2001 Symposium on Parallel and Large-Data Visualization and Graphics, 2001
2000
Rapid Software Prototyping in Molecular Modeling Using the Biochemical Algorithms Library (BALL).
ACM J. Exp. Algorithmics, 2000
1999
Rapid Software Prototyping in Computational Molecular Biology.
Proceedings of the German Conference on Bioinformatics, 1999