Brian D. Ondov

According to our database, Brian D. Ondov authored at least 21 papers between 2008 and 2026.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2026

IRIS: time-structured manifold projections.

Brian D. Ondov, Chia-Hsuan Chang, Weipeng Zhou, Xingjian Zhang, Xueqing Peng, Yutong Xie, Huan He, Qiaozhu Mei, Hua Xu

CoRR, May, 2026

MedViz: An Agent-based, Visual-guided Research Assistant for Navigating Biomedical Literature.

Huan He, Xueqing Peng, Yutong Xie, Qijia Liu, Chia-Hsuan Chang, Lingfei Qian, Brian D. Ondov, Qiaozhu Mei, Hua Xu

CoRR, January, 2026

Lessons from the TREC Plain Language Adaptation of Biomedical Abstracts (PLABA) track.

Brian D. Ondov, William Xia, Kush Attal, Ishita Unde, Jerry He, Dina Demner-Fushman

J. Biomed. Informatics, 2026

2025

SemNovel - A new approach to detecting semantic novelty of biomedical publications using embeddings of large language models.

Xueqing Peng, Yutong Xie, Huan He, Brian D. Ondov, Kalpana Raja, Qijia Liu, Qiaozhu Mei, Hua Xu

J. Biomed. Informatics, 2025

TopicForest: embedding-driven hierarchical clustering and labeling for biomedical literature.

Chia-Hsuan Chang, Brian D. Ondov, Bin Choi, Xueqing Peng, Huan He, Hua Xu

J. Biomed. Informatics, 2025

JEBS: A Fine-grained Biomedical Lexical Simplification Task.

William Xia, Ishita Unde, Brian David Ondov, Dina Demner-Fushman

Proceedings of the Findings of the Association for Computational Linguistics, 2025

2024

Visualizing multilayer spatiotemporal epidemiological data with animated geocircles.

Brian D. Ondov, Harsh B. Patel, Ai-Te Kuo, John H. Kastner, Yunheng Han, Hong Wei, Niklas Elmqvist, Hanan Samet

J. Am. Medical Informatics Assoc., 2024

Towards Enhanced Topic Discovery on Semantic Maps for Biomedical Literature Exploration.

Bin Choi, Brian D. Ondov, Huan He, Hua Xu

Proceedings of the Workshop on Visual Analytics in Healthcare, 2024

Pedagogically Aligned Objectives Create Reliable Automatic Cloze Tests.

Brian D. Ondov, Kush Attal, Dina Demner-Fushman

Proceedings of the 2024 Conference of the North American Chapter of the Association for Computational Linguistics: Human Language Technologies (Volume 1: Long Papers), 2024

Sentence-Aligned Simplification of Biomedical Abstracts.

Brian D. Ondov, Dina Demner-Fushman

Proceedings of the Artificial Intelligence in Medicine - 22nd International Conference, 2024

2023

An efficient region expansion algorithm for regular triangulated meshes.

Brian D. Ondov, Hanan Samet

Pattern Recognit. Lett., April, 2023

2022

A survey of automated methods for biomedical text simplification.

Brian D. Ondov, Kush Attal, Dina Demner-Fushman

J. Am. Medical Informatics Assoc., 2022

CoronaViz: Visualizing Multilayer Spatiotemporal COVID-19 Data with Animated Geocircles.

Brian D. Ondov, Harsh B. Patel, Ai-Te Kuo, Hanan Samet, John H. Kastner, Yunheng Han, Hong Wei, Niklas Elmqvist

CoRR, 2022

A Dataset for Plain Language Adaptation of Biomedical Abstracts.

Kush Attal, Brian D. Ondov, Dina Demner-Fushman

CoRR, 2022

2021

Revealing Perceptual Proxies in Comparative Data Visualization.

Brian D. Ondov

PhD thesis, 2021

Revealing Perceptual Proxies with Adversarial Examples.

Brian D. Ondov, Fumeng Yang, Matthew Kay, Niklas Elmqvist, Steven Franconeri

IEEE Trans. Vis. Comput. Graph., 2021

2020

The Perceptual Proxies of Visual Comparison.

Nicole Jardine, Brian D. Ondov, Niklas Elmqvist, Steven Franconeri

IEEE Trans. Vis. Comput. Graph., 2020

2019

Face to Face: Evaluating Visual Comparison.

Brian D. Ondov, Nicole Jardine, Niklas Elmqvist, Steven Franconeri

IEEE Trans. Vis. Comput. Graph., 2019

2011

Interactive metagenomic visualization in a Web browser.

Brian D. Ondov, Nicholas H. Bergman, Adam M. Phillippy

BMC Bioinform., 2011

2010

An alignment algorithm for bisulfite sequencing using the Applied Biosystems SOLiD System.

Brian D. Ondov, Charles Cochran, Mark Landers, Gavin D. Meredith, Miroslav Dudas, Nicholas H. Bergman

Bioinform., 2010

2008

Efficient mapping of Applied Biosystems SOLiD sequence data to a reference genome for functional genomic applications.

Brian D. Ondov, Anjana Varadarajan, Karla D. Passalacqua, Nicholas H. Bergman

Bioinform., 2008