Kalpana Raja

According to our database, Kalpana Raja authored at least 22 papers between 2013 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2023

Serial KinderMiner (SKiM) discovers and annotates biomedical knowledge using co-occurrence and transformer models.

Robert J. Millikin, Kalpana Raja, John W. Steill, Cannon Lock, Xuancheng Tu, Ian Ross, Lam C. Tsoi, Finn Kuusisto, Zijian Ni, Miron Livny, Brian Bockelman, James A. Thomson, Ron M. Stewart

BMC Bioinform., December, 2023

Towards precise PICO extraction from abstracts of randomized controlled trials using a section-specific learning approach.

Yan Hu, Vipina Kuttichi Keloth, Kalpana Raja, Yong Chen, Hua Xu

Bioinform., September, 2023

Representing and utilizing clinical textual data for real world studies: An OHDSI approach.

Vipina Kuttichi Keloth, Juan M. Banda, Michael J. Gurley, Paul M. Heider, Georgina Kennedy, Hongfang Liu, Feifan Liu, Timothy A. Miller, Karthik Natarajan, Olga V. Patterson, Yifan Peng, Kalpana Raja, Ruth M. Reeves, Masoud Rouhizadeh, Jianlin Shi, Xiaoyan Wang, Yanshan Wang, Wei-Qi Wei, Andrew E. Williams, Rui Zhang, Rimma Belenkaya, Christian G. Reich, Clair Blacketer, Patrick B. Ryan, George Hripcsak, Noémie Elhadad, Hua Xu

J. Biomed. Informatics, June, 2023

Large language models in biomedical natural language processing: benchmarks, baselines, and recommendations.

Qingyu Chen, Jingcheng Du, Yan Hu, Vipina Kuttichi Keloth, Xueqing Peng, Kalpana Raja, Rui Zhang, Zhiyong Lu, Hua Xu

CoRR, 2023

2021

Advancement in predicting interactions between drugs used to treat psoriasis and its comorbidities by integrating molecular and clinical resources.

Matthew T. Patrick, Redina Bardhi, Kalpana Raja, Kevin He, Lam C. Tsoi

J. Am. Medical Informatics Assoc., 2021

2020

Automated Extraction and Visualization of Protein-Protein Interaction Networks and Beyond: A Text-Mining Protocol.

Kalpana Raja, Jeyakumar Natarajan, Finn Kuusisto, John W. Steill, Ian Ross, James A. Thomson, Ron M. Stewart

Proceedings of the Protein-Protein Interaction Networks, Methods and Protocols., 2020

2018

Discovery of novel inhibitors targeting movement protein for controlling the transmission of banana bunchy top virus infection in plantain by structure-based virtual screening.

Archana Prabahar, Subashini Swaminathan, Kalpana Raja, Srividhya Vellingiri, Ramalingam Jegadeesan, Bharathi Nathan

Int. J. Bioinform. Res. Appl., 2018

Mining protein phosphorylation information from biomedical literature using NLP parsing and Support Vector Machines.

Kalpana Raja, Jeyakumar Natarajan

Comput. Methods Programs Biomed., 2018

2016

Classification of clinically useful sentences in clinical evidence resources.

Mohammad Amin Morid, Marcelo Fiszman, Kalpana Raja, Siddhartha Jonnalagadda, Guilherme Del Fiol

J. Biomed. Informatics, 2016

A Hybrid Citation Retrieval Algorithm for Evidence-based Clinical Knowledge Summarization: Combining Concept Extraction, Vector Similarity and Query Expansion for High Precision.

Kalpana Raja, Andrew J. Sauer, Ravi Prakash Garg, Melanie R. Klerer, Siddhartha R. Jonnalagadda

CoRR, 2016

CRTS: A type system for representing clinical recommendations.

Ravi Prakash Garg, Kalpana Raja, Siddhartha R. Jonnalagadda

CoRR, 2016

Towards Evidence-Based Precision Medicine: Extracting Population Information from Biomedical Text using Binary Classifiers and Syntactic Patterns.

Kalpana Raja, Naman Dasot, Pawan Goyal, Siddhartha R. Jonnalagadda

Proceedings of the Summit on Clinical Research Informatics, 2016

2015

HPIminer: A text mining system for building and visualizing human protein interaction networks and pathways.

Suresh Subramani, Raja Kalpana, Pankaj Moses Monickaraj, Jeyakumar Natarajan

J. Biomed. Informatics, 2015

Agile text mining for the 2014 i2b2/UTHealth Cardiac risk factors challenge.

James Cormack, Chinmoy Nath, David Milward, Kalpana Raja, Siddhartha R. Jonnalagadda

J. Biomed. Informatics, 2015

Concept based Information Retrieval for Clinical Case Summaries.

Jakob Stöber, Bret S. E. Heale, Kelley Fulghum, Guilherme Del Fiol, Heejun Kim, Kalpana Raja, Siddhartha Jonnalagadda

Proceedings of The Twenty-Fourth Text REtrieval Conference, 2015

Automated Citation Retrieval System for Clinical Knowledge Management.

Kalpana Raja, Andrew J. Sauer, Melanie R. Klerer, Siddhartha R. Jonnalagadda

Proceedings of the AMIA 2015, 2015

Classification of Clinically Useful Sentences in MEDLINE.

Mohammad Amin Morid, Siddhartha R. Jonnalagadda, Marcelo Fiszman, Kalpana Raja, Guilherme Del Fiol

Proceedings of the AMIA 2015, 2015

Natural Language Processing and Data Mining for Clinical Text.

Kalpana Raja, Siddhartha Jonnalagadda

Proceedings of the Healthcare Data Analytics., 2015

2014

ProNormz - An integrated approach for human proteins and protein kinases normalization.

Suresh Subramani, Kalpana Raja, Jeyakumar Natarajan

J. Biomed. Informatics, 2014

A hybrid named entity tagger for tagging human proteins/genes.

Kalpana Raja, Suresh Subramani, Jeyakumar Natarajan

Int. J. Data Min. Bioinform., 2014

2013

PPInterFinder - a mining tool for extracting causal relations on human proteins from literature.

Kalpana Raja, Suresh Subramani, Jeyakumar Natarajan

Database J. Biol. Databases Curation, 2013

An overview of the BioCreative 2012 Workshop Track III: interactive text mining task.

Cecilia N. Arighi, Ben Carterette, K. Bretonnel Cohen, Martin Krallinger, W. John Wilbur, Petra Fey, Robert J. Dodson, Laurel Cooper, Ceri E. Van Slyke, Wasila M. Dahdul, Paula M. Mabee, Donghui Li, Bethany R. Harris, Marc Gillespie, Silvia Jimenez, Phoebe M. Roberts, Lisa Matthews, Kevin G. Becker, Harold J. Drabkin, Susan M. Bello, Luana Licata, Andrew Chatr-aryamontri, Mary L. Schaeffer, Julie Park, Melissa A. Haendel, Kimberly Van Auken, Yuling Li, Juancarlos Chan, Hans-Michael Müller, Hong Cui, James P. Balhoff, Chi-Yang Wu, Zhiyong Lu, Chih-Hsuan Wei, Catalina O. Tudor, Kalpana Raja, Suresh Subramani, Jeyakumar Natarajan, Juan Miguel Cejuela, Pratibha Dubey, Cathy H. Wu

Database J. Biol. Databases Curation, 2013