Hua Xu
Orcid: 0000-0002-5274-4672Affiliations:
- University of Texas Health Science Center at Houston, School of Biomedical Informatics, TX, USA
- Vanderbilt University, School of Medicine, Department of Biomedical Informatics, Nashville, TN, USA (former)
According to our database1,
Hua Xu
authored at least 284 papers
between 2003 and 2024.
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Bibliography
2024
Complementary and Integrative Health Information in the literature: its lexicon and named entity recognition.
J. Am. Medical Informatics Assoc., January, 2024
2023
Towards More Generalizable and Accurate Sentence Classification in Medical Abstracts with Less Data.
J. Heal. Informatics Res., December, 2023
An open natural language processing (NLP) framework for EHR-based clinical research: a case demonstration using the National COVID Cohort Collaborative (N3C).
J. Am. Medical Informatics Assoc., November, 2023
Systematic design and data-driven evaluation of social determinants of health ontology (SDoHO).
J. Am. Medical Informatics Assoc., August, 2023
Representing and utilizing clinical textual data for real world studies: An OHDSI approach.
J. Biomed. Informatics, June, 2023
A hierarchical strategy to minimize privacy risk when linking "De-identified" data in biomedical research consortia.
J. Biomed. Informatics, March, 2023
Blockchain-enabled immutable, distributed, and highly available clinical research activity logging system for federated COVID-19 data analysis from multiple institutions.
J. Am. Medical Informatics Assoc., 2023
Assess the documentation of cognitive tests and biomarkers in electronic health records via natural language processing for Alzheimer's disease and related dementias.
Int. J. Medical Informatics, 2023
CoRR, 2023
Large language models in biomedical natural language processing: benchmarks, baselines, and recommendations.
CoRR, 2023
Extracting Drug-Protein Relation from Literature Using Ensembles of Biomedical Transformers.
Proceedings of the MEDINFO 2023 - The Future Is Accessible, 2023
Repurposing Drugs for Alzheimer's Diseases through Link Prediction on Biomedical Literature.
Proceedings of the 11th IEEE International Conference on Healthcare Informatics, 2023
Development of a Natural Language Processing Tool to Extract Acupuncture Point Location Terms.
Proceedings of the 11th IEEE International Conference on Healthcare Informatics, 2023
Proceedings of the 11th IEEE International Conference on Healthcare Informatics, 2023
Proceedings of the 14th ACM International Conference on Bioinformatics, 2023
2022
Patterns, 2022
A comparative study of pre-trained language models for named entity recognition in clinical trial eligibility criteria from multiple corpora.
BMC Medical Informatics Decis. Mak., 2022
Knowl. Based Syst., 2022
J. Biomed. Informatics, 2022
Discovering novel drug-supplement interactions using SuppKG generated from the biomedical literature.
J. Biomed. Informatics, 2022
J. Am. Medical Informatics Assoc., 2022
CoRR, 2022
Make Acoustic and Visual Cues Matter: CH-SIMS v2.0 Dataset and AV-Mixup Consistent Module.
CoRR, 2022
Evaluation of mCODE Coverage in EHR: a Scoping Review of Cancer Natural Language Processing.
Proceedings of the 10th IEEE International Conference on Healthcare Informatics, 2022
IMI-CDE: an interactive interface for collaborative mapping of study variables to common data elements.
Proceedings of the 10th IEEE International Conference on Healthcare Informatics, 2022
Improving Sentence Classification in Abstracts of Randomized Controlled Trial using Prompt Learning.
Proceedings of the 10th IEEE International Conference on Healthcare Informatics, 2022
Proceedings of the 10th IEEE International Conference on Healthcare Informatics, 2022
Conversational Bots for Psychotherapy: A Study of Generative Transformer Models Using Domain-specific Dialogues.
Proceedings of the 21st Workshop on Biomedical Language Processing, 2022
ClinicalLayoutLM: A Pre-trained Multi-modal Model for Understanding Scanned Document in Electronic Health Records.
Proceedings of the IEEE International Conference on Big Data, 2022
Proceedings of the AMIA 2022, 2022
Fast Textual Corpus Retrieval from Electronic Health Records using PDF Parser and TxtSplit Tools.
Proceedings of the AMIA 2022, 2022
Existing and emerging privacy challenges and solutions for federated data coordination.
Proceedings of the AMIA 2022, 2022
2021
Representation iterative fusion based on heterogeneous graph neural network for joint entity and relation extraction.
Knowl. Based Syst., 2021
COVID-19 SignSym: a fast adaptation of a general clinical NLP tool to identify and normalize COVID-19 signs and symptoms to OMOP common data model.
J. Am. Medical Informatics Assoc., 2021
Are synthetic clinical notes useful for real natural language processing tasks: A case study on clinical entity recognition.
J. Am. Medical Informatics Assoc., 2021
Privacy-protecting, reliable response data discovery using COVID-19 patient observations.
J. Am. Medical Informatics Assoc., 2021
Extracting postmarketing adverse events from safety reports in the vaccine adverse event reporting system (VAERS) using deep learning.
J. Am. Medical Informatics Assoc., 2021
The application of artificial intelligence and data integration in COVID-19 studies: a scoping review.
J. Am. Medical Informatics Assoc., 2021
From Tokenization to Self-Supervision: Building a High-Performance Information Extraction System for Chemical Reactions in Patents.
Frontiers Res. Metrics Anal., 2021
An Open Natural Language Processing Development Framework for EHR-based Clinical Research: A case demonstration using the National COVID Cohort Collaborative (N3C).
CoRR, 2021
Simple Recurrent Neural Networks is all we need for clinical events predictions using EHR data.
CoRR, 2021
An Empirical Study of UMLS Concept Extraction from Clinical Notes using Boolean Combination Ensembles.
CoRR, 2021
Discovering novel drug-supplement interactions using a dietary supplements knowledge graph generated from the biomedical literature.
CoRR, 2021
How do we share data in COVID-19 research? A systematic review of COVID-19 datasets in PubMed Central Articles.
Briefings Bioinform., 2021
Study of Pre-trained Language Models for Named Entity Recognition in Clinical Trial Eligibility Criteria from Multiple Corpora.
Proceedings of the 9th IEEE International Conference on Healthcare Informatics, 2021
Proceedings of the 9th IEEE International Conference on Healthcare Informatics, 2021
CovRNN: predicting outcomes of COVID-19 patients on admission using their electronic health records with minimal data processing.
Proceedings of the AMIA 2021, American Medical Informatics Association Annual Symposium, San Diego, CA, USA, October 30, 2021, 2021
Generalizable Gated Recurrent Neural Network based model to predict COVID-19 patient outcomes on admission.
Proceedings of the AMIA 2021, American Medical Informatics Association Annual Symposium, San Diego, CA, USA, October 30, 2021, 2021
Proceedings of the Joint Conference of the 59th Annual Meeting of the Association for Computational Linguistics and the 11th International Joint Conference on Natural Language Processing, 2021
2020
Conversational ontology operator: patient-centric vaccine dialogue management engine for spoken conversational agents.
BMC Medical Informatics Decis. Mak., 2020
A study of entity-linking methods for normalizing Chinese diagnosis and procedure terms to ICD codes.
J. Biomed. Informatics, 2020
J. Am. Medical Informatics Assoc., 2020
A study of deep learning approaches for medication and adverse drug event extraction from clinical text.
J. Am. Medical Informatics Assoc., 2020
Representation of EHR data for predictive modeling: a comparison between UMLS and other terminologies.
J. Am. Medical Informatics Assoc., 2020
J. Am. Medical Informatics Assoc., 2020
Time event ontology (TEO): to support semantic representation and reasoning of complex temporal relations of clinical events.
J. Am. Medical Informatics Assoc., 2020
Learning from local to global: An efficient distributed algorithm for modeling time-to-event data.
J. Am. Medical Informatics Assoc., 2020
Learning from electronic health records across multiple sites: A communication-efficient and privacy-preserving distributed algorithm.
J. Am. Medical Informatics Assoc., 2020
J. Am. Medical Informatics Assoc., 2020
Health Informatics J., 2020
Exploring temporal suicidal behavior patterns on social media: Insight from Twitter analytics.
Health Informatics J., 2020
Ontological representation-oriented term normalization and standardization of the Research Domain Criteria.
Health Informatics J., 2020
CoRR, 2020
Proceedings of the 8th IEEE International Conference on Healthcare Informatics, 2020
A Natural Language Processing Tool to Extract Quantitative Smoking Status from Clinical Narratives.
Proceedings of the 8th IEEE International Conference on Healthcare Informatics, 2020
Opioid2FHIR: A system for extracting FHIR-compatible opioid prescriptions from clinical text.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2020
Proceedings of the AMIA 2020, 2020
Proceedings of the AMIA 2020, 2020
Proceedings of the AMIA 2020, 2020
2019
Parsing clinical text using the state-of-the-art deep learning based parsers: a systematic comparison.
BMC Medical Informatics Decis. Mak., 2019
Applying a deep learning-based sequence labeling approach to detect attributes of medical concepts in clinical text.
BMC Medical Informatics Decis. Mak., 2019
A fine-grained Chinese word segmentation and part-of-speech tagging corpus for clinical text.
BMC Medical Informatics Decis. Mak., 2019
Time-sensitive clinical concept embeddings learned from large electronic health records.
BMC Medical Informatics Decis. Mak., 2019
Editorial: The second international workshop on health natural language processing (HealthNLP 2019).
BMC Medical Informatics Decis. Mak., 2019
Special issue of BMC medical informatics and decision making on health natural language processing.
BMC Medical Informatics Decis. Mak., 2019
BMC Medical Informatics Decis. Mak., 2019
Integrating shortest dependency path and sentence sequence into a deep learning framework for relation extraction in clinical text.
BMC Medical Informatics Decis. Mak., 2019
J. Am. Medical Informatics Assoc., 2019
J. Am. Medical Informatics Assoc., 2019
J. Am. Medical Informatics Assoc., 2019
Psychiatric stressor recognition from clinical notes to reveal association with suicide.
Health Informatics J., 2019
Proceedings of the 4th International Workshop on Semantics-Powered Data Mining and Analytics co-located with the 18th International Semantic Web Conference (ISWC 2019), 2019
Proceedings of the 2019 Conference of the North American Chapter of the Association for Computational Linguistics: Human Language Technologies, 2019
Developing Customizable Cancer Information Extraction Modules for Pathology Reports Using CLAMP.
Proceedings of the MEDINFO 2019: Health and Wellbeing e-Networks for All, 2019
Proceedings of the 2019 IEEE International Conference on Healthcare Informatics, 2019
Ontology of Consumer Health Vocabulary: providing a formal and interoperable semantic resource for linking lay language and medical terminology.
Proceedings of the 2019 IEEE International Conference on Bioinformatics and Biomedicine, 2019
Proceedings of the AMIA 2019, 2019
Proceedings of the AMIA 2019, 2019
Proceedings of the AMIA 2019, 2019
2018
BMC Medical Informatics Decis. Mak., 2018
BMC Medical Informatics Decis. Mak., 2018
J. Medical Syst., 2018
A study of generalizability of recurrent neural network-based predictive models for heart failure onset risk using a large and heterogeneous EHR data set.
J. Biomed. Informatics, 2018
J. Biomed. Informatics, 2018
J. Am. Medical Informatics Assoc., 2018
Toward a normalized clinical drug knowledge base in China - applying the RxNorm model to Chinese clinical drugs.
J. Am. Medical Informatics Assoc., 2018
CLAMP - a toolkit for efficiently building customized clinical natural language processing pipelines.
J. Am. Medical Informatics Assoc., 2018
PIE: A prior knowledge guided integrated likelihood estimation method for bias reduction in association studies using electronic health records data.
J. Am. Medical Informatics Assoc., 2018
User needs analysis and usability assessment of DataMed - a biomedical data discovery index.
J. Am. Medical Informatics Assoc., 2018
J. Am. Medical Informatics Assoc., 2018
Extraction of BI-RADS findings from breast ultrasound reports in Chinese using deep learning approaches.
Int. J. Medical Informatics, 2018
Parsing Clinical Text: How Good are the state-of-the-art Deep Learning Based Parsers?
Proceedings of the IEEE International Conference on Healthcare Informatics Workshops, 2018
Proceedings of the IEEE International Conference on Healthcare Informatics Workshops, 2018
Proceedings of the IEEE International Conference on Healthcare Informatics Workshops, 2018
Proceedings of the AMIA 2018, 2018
CLAMP-PA: A machine learning based pre-annotation pipeline for corpus construction of clinical concepts.
Proceedings of the AMIA 2018, 2018
Combine Factual Medical Knowledge and Distributed Word Representation to Improve Clinical Named Entity Recognition.
Proceedings of the AMIA 2018, 2018
Proceedings of the AMIA 2018, 2018
Building a Biomedical Bilingual Parallel Corpus between Chinese and English from PubMed.
Proceedings of the AMIA 2018, 2018
Proceedings of the AMIA 2018, 2018
Proceedings of the AMIA 2018, 2018
2017
Introduction: the International Conference on Intelligent Biology and Medicine (ICIBM) 2016: special focus on medical informatics and big data.
BMC Medical Informatics Decis. Mak., 2017
BMC Medical Informatics Decis. Mak., 2017
BMC Medical Informatics Decis. Mak., 2017
Lightweight predicate extraction for patient-level cancer information and ontology development.
BMC Medical Informatics Decis. Mak., 2017
A long journey to short abbreviations: developing an open-source framework for clinical abbreviation recognition and disambiguation (CARD).
J. Am. Medical Informatics Assoc., 2017
The International Conference on Intelligent Biology and Medicine (ICIBM) 2016: putting systems biology to work.
BMC Syst. Biol., 2017
Investigating MicroRNA and transcription factor co-regulatory networks in colorectal cancer.
BMC Bioinform., 2017
Information retrieval for biomedical datasets: the 2016 bioCADDIE dataset retrieval challenge.
Database J. Biol. Databases Curation, 2017
A publicly available benchmark for biomedical dataset retrieval: the reference standard for the 2016 bioCADDIE dataset retrieval challenge.
Database J. Biol. Databases Curation, 2017
Identification of adverse drug-drug interactions through causal association rule discovery from spontaneous adverse event reports.
Artif. Intell. Medicine, 2017
UTH_CCB System for Adverse Drug Reaction Extraction from Drug Labels at TAC-ADR 2017.
Proceedings of the 2017 Text Analysis Conference, 2017
Proceedings of the MEDINFO 2017: Precision Healthcare through Informatics, 2017
Proceedings of the MEDINFO 2017: Precision Healthcare through Informatics, 2017
Interweaving Domain Knowledge and Unsupervised Learning for Psychiatric Stressor Extraction from Clinical Notes.
Proceedings of the Advances in Artificial Intelligence: From Theory to Practice, 2017
Knowledge-Based Approach for Named Entity Recognition in Biomedical Literature: A Use Case in Biomedical Software Identification.
Proceedings of the Advances in Artificial Intelligence: From Theory to Practice, 2017
Identifying Metastases related Information from Pathology Reports of Lung Cancer Patients.
Proceedings of the Summit on Clinical Research Informatics, 2017
A comparative study of different methods for automatic identification of clopidogrel-induced bleedings in electronic health records.
Proceedings of the Summit on Clinical Research Informatics, 2017
Using ensembles of NLP engines without a common type system to improve abbreviation disambiguation.
Proceedings of the Summit on Clinical Research Informatics, 2017
Towards practical temporal relation extraction from clinical notes: An analysis of direct temporal relations.
Proceedings of the 2017 IEEE International Conference on Bioinformatics and Biomedicine, 2017
A pilot study of mining association between psychiatric stressors and symptoms in tweets.
Proceedings of the 2017 IEEE International Conference on Bioinformatics and Biomedicine, 2017
Evaluating Word Embeddings from Multiple Domains for Symptom Recognition in Psychiatric Notes.
Proceedings of the AMIA 2017, 2017
Detecting Body Location Modifiers of Disorders in Clinical Texts via Sequence Labeling.
Proceedings of the AMIA 2017, 2017
Proceedings of the AMIA 2017, 2017
Proceedings of the AMIA 2017, 2017
Proceedings of the AMIA 2017, 2017
Matching Consumer Health Vocabulary with Professional Medical Terms Through Concept Embedding.
Proceedings of the AMIA 2017, 2017
Proceedings of the AMIA 2017, 2017
Identifying Disease Hierarchical Relation with Concept Embeddings and Distant Supervision.
Proceedings of the AMIA 2017, 2017
Proceedings of the AMIA 2017, 2017
Proceedings of the AMIA 2017, 2017
Leveraging existing corpora for de-identification of psychiatric notes using domain adaptation.
Proceedings of the AMIA 2017, 2017
Proceedings of the AMIA 2017, 2017
Proceedings of the AMIA 2017, 2017
Proceedings of the AMIA 2017, 2017
2016
J. Am. Medical Informatics Assoc., 2016
Extracting genetic alteration information for personalized cancer therapy from ClinicalTrials.gov.
J. Am. Medical Informatics Assoc., 2016
Leveraging syntactic and semantic graph kernels to extract pharmacokinetic drug drug interactions from biomedical literature.
BMC Syst. Biol., 2016
Erratum to: Extracting drug-enzyme relation from literature as evidence for drug drug interaction.
J. Biomed. Semant., 2016
Extracting drug-enzyme relation from literature as evidence for drug drug interaction.
J. Biomed. Semant., 2016
Chemical named entity recognition in patents by domain knowledge and unsupervised feature learning.
Database J. Biol. Databases Curation, 2016
Database J. Biol. Databases Curation, 2016
UTHealth at SemEval-2016 Task 12: an End-to-End System for Temporal Information Extraction from Clinical Notes.
Proceedings of the 10th International Workshop on Semantic Evaluation, 2016
Developing Combination Cancer Therapy from Ontology Fingerprint Derived Gene Network.
Proceedings of the Summit on Clinical Research Informatics, 2016
Proceedings of the 2016 IEEE-EMBS International Conference on Biomedical and Health Informatics, 2016
Proceedings of the AMIA 2016, 2016
Development of DataMed, a Data Discovery Index Prototype by bioCADDIE: Laying the Groundwork for Biomedical Data Discovery.
Proceedings of the AMIA 2016, 2016
Proceedings of the AMIA 2016, 2016
A Study of Active Learning for Document Selection in Clinical Named Entity Recognition.
Proceedings of the AMIA 2016, 2016
Proceedings of the AMIA 2016, 2016
Proceedings of the AMIA 2016, 2016
Proceedings of the AMIA 2016, 2016
Natural Language Processing Working Group Pre-Symposium: Graduate Student Consortium and 'Hackathon'.
Proceedings of the AMIA 2016, 2016
Proceedings of the AMIA 2016, 2016
Building Successful Natural Language Processing Applications in Clinical Research and Healthcare Operations.
Proceedings of the AMIA 2016, 2016
Proceedings of the AMIA 2016, 2016
An Empirical Study for Impacts of Measurement Errors on EHR based Association Studies.
Proceedings of the AMIA 2016, 2016
Proceedings of the AMIA 2016, 2016
2015
Deciphering Signaling Pathway Networks to Understand the Molecular Mechanisms of Metformin Action.
PLoS Comput. Biol., 2015
BMC Medical Informatics Decis. Mak., 2015
A comparison of conditional random fields and structured support vector machines for chemical entity recognition in biomedical literature.
J. Cheminformatics, 2015
J. Cheminformatics, 2015
Ease of adoption of clinical natural language processing software: An evaluation of five systems.
J. Biomed. Informatics, 2015
J. Biomed. Informatics, 2015
J. Am. Medical Informatics Assoc., 2015
Validating drug repurposing signals using electronic health records: a case study of metformin associated with reduced cancer mortality.
J. Am. Medical Informatics Assoc., 2015
A weighted and integrated drug-target interactome: drug repurposing for schizophrenia as a use case.
BMC Syst. Biol., 2015
A comparative study of disease genes and drug targets in the human protein interactome.
BMC Bioinform., 2015
Colorectal cancer drug target prediction using ontology-based inference and network analysis.
Database J. Biol. Databases Curation, 2015
Using Ontology Fingerprints to disambiguate gene name entities in the biomedical literature.
Database J. Biol. Databases Curation, 2015
Proceedings of the 9th International Workshop on Semantic Evaluation, 2015
Proceedings of the MEDINFO 2015: eHealth-enabled Health, 2015
Proceedings of the Workshop on Biomedical Natural Language Processing, BioNLP@IJCNLP 2015, 2015
Proceedings of the AMIA 2015, 2015
Recognizing Disjoint Clinical Concepts in Clinical Text Using Machine Learning-based Methods.
Proceedings of the AMIA 2015, 2015
Clinical Language Annotation, Modeling, and Processing Toolkit (CLAMP) - a user-centric NLP system.
Proceedings of the AMIA 2015, 2015
Proceedings of the AMIA 2015, 2015
Proceedings of the AMIA 2015, 2015
2014
Identifying plausible adverse drug reactions using knowledge extracted from the literature.
J. Biomed. Informatics, 2014
Determining molecular predictors of adverse drug reactions with causality analysis based on structure learning.
J. Am. Medical Informatics Assoc., 2014
Research and applications: A comprehensive study of named entity recognition in Chinese clinical text.
J. Am. Medical Informatics Assoc., 2014
J. Am. Medical Informatics Assoc., 2014
J. Am. Medical Informatics Assoc., 2014
Proceedings of the 8th International Workshop on Semantic Evaluation, 2014
Proceedings of the 5th International Conference on Biomedical Ontology, 2014
Drug Target Prediction for Colorectal Cancer by Combining Ontology and Network Approaches.
Proceedings of the 5th International Conference on Biomedical Ontology, 2014
Quality of Care Metric Reporting from Clinical Narratives: Assessing Ontology Components.
Proceedings of the 5th International Conference on Biomedical Ontology, 2014
Using Ontology Fingerprints to Disambiguate Gene Name Entities in the Biomedical Literature.
Proceedings of the 5th International Conference on Biomedical Ontology, 2014
DTMBIO 2014: International Workshop on Data and Text Mining in Biomedical Informatics.
Proceedings of the 23rd ACM International Conference on Conference on Information and Knowledge Management, 2014
Proceedings of the AMIA 2014, 2014
Proceedings of the AMIA 2014, 2014
Proceedings of the AMIA 2014, 2014
Proceedings of the AMIA 2014, 2014
Proceedings of the AMIA 2014, 2014
Proceedings of the AMIA 2014, 2014
Proceedings of the AMIA 2014, 2014
Proceedings of the AMIA 2014, 2014
A Preliminary Study of Coupling Transfer Learning with Active Learning for Clinical Named Entity Recognition between Two Institutions.
Proceedings of the AMIA 2014, 2014
Automated Assessment of Medical Students' Clinical Exposures according to AAMC Geriatric Competencies.
Proceedings of the AMIA 2014, 2014
2013
Recognizing clinical entities in hospital discharge summaries using Structural Support Vector Machines with word representation features.
BMC Medical Informatics Decis. Mak., 2013
Research and applications: ICD-9 tobacco use codes are effective identifiers of smoking status.
J. Am. Medical Informatics Assoc., 2013
Development and evaluation of an ensemble resource linking medications to their indications.
J. Am. Medical Informatics Assoc., 2013
J. Am. Medical Informatics Assoc., 2013
Research and applications: Machine learning for predicting the response of breast cancer to neoadjuvant chemotherapy.
J. Am. Medical Informatics Assoc., 2013
Comparative analysis of pharmacovigilance methods in the detection of adverse drug reactions using electronic medical records.
J. Am. Medical Informatics Assoc., 2013
Research and applications: Syntactic parsing of clinical text: guideline and corpus development with handling ill-formed sentences.
J. Am. Medical Informatics Assoc., 2013
J. Am. Medical Informatics Assoc., 2013
Analyzing Differences between Chinese and English Clinical Text: A Cross-Institution Comparison of Discharge Summaries in Two Languages.
Proceedings of the MEDINFO 2013, 2013
Proceedings of the Working Notes for CLEF 2013 Conference , 2013
Proceedings of the Working Notes for CLEF 2013 Conference , 2013
Recognizing and Encoding Discorder Concepts in Clinical Text using Machine Learning and Vector Space Model.
Proceedings of the Working Notes for CLEF 2013 Conference , 2013
A prototype application for real-time recognition and disambiguation of clinical abbreviations.
Proceedings of the Proceeding of the 7rd International Workshop on Data and Text Mining in Bioinformatics, 2013
DTMBIO 2013: international workshop on data and text mining in biomedical informatics.
Proceedings of the 22nd ACM International Conference on Information and Knowledge Management, 2013
Messaging to your doctors: understanding patient-provider communications via a portal system.
Proceedings of the 2013 ACM SIGCHI Conference on Human Factors in Computing Systems, 2013
Proceedings of the 2013 IEEE International Conference on Bioinformatics and Biomedicine, 2013
Understanding Consumers' Information Needs about Breast Cancer by Analyzing Online Questions.
Proceedings of the AMIA 2013, 2013
Proceedings of the AMIA 2013, 2013
Proceedings of the AMIA 2013, 2013
Proceedings of the AMIA 2013, 2013
Proceedings of the AMIA 2013, 2013
Proceedings of the AMIA 2013, 2013
2012
Recognition of medication information from discharge summaries using ensembles of classifiers.
BMC Medical Informatics Decis. Mak., 2012
A new clustering method for detecting rare senses of abbreviations in clinical notes.
J. Biomed. Informatics, 2012
J. Biomed. Informatics, 2012
Large-scale prediction of adverse drug reactions using chemical, biological, and phenotypic properties of drugs.
J. Am. Medical Informatics Assoc., 2012
Portability of an algorithm to identify rheumatoid arthritis in electronic health records.
J. Am. Medical Informatics Assoc., 2012
Extracting epidemiologic exposure and outcome terms from literature using machine learning approaches.
Int. J. Data Min. Bioinform., 2012
BMC Syst. Biol., 2012
Genetic studies of complex human diseases: Characterizing SNP-disease associations using Bayesian networks.
BMC Syst. Biol., 2012
BMC Bioinform., 2012
Ranking Gene-Drug Relationships in Biomedical Literature Using Latent Dirichlet Allocation.
Proceedings of the Biocomputing 2012: Proceedings of the Pacific Symposium, 2012
Detecting Adverse Drug Reactions Using Inpatient Medication Orders and Laboratory Tests Data.
Proceedings of the 2012 IEEE Second International Conference on Healthcare Informatics, 2012
Clinical entity recognition using structural support vector machines with rich features.
Proceedings of the ACM sixth international workshop on Data and text mining in biomedical informatics, 2012
DTMBIO 2012: international workshop on data and text mining in biomedical informatics.
Proceedings of the 21st ACM International Conference on Information and Knowledge Management, 2012
Proceedings of the Information, Interaction, Innovation: Celebrating the Past, Constructing the Present and Creating the Future, 2012
Combining Corpus-derived Sense Profiles with Estimated Frequency Information to Disambiguate Clinical Abbreviations.
Proceedings of the AMIA 2012, 2012
Electronic health record data suggests metformin improves cancer survival: A new model for drug repurposing studies.
Proceedings of the AMIA 2012, 2012
A comparative study of current clinical natural language processing systems on handling abbreviations in discharge summaries.
Proceedings of the AMIA 2012, 2012
Proceedings of the AMIA 2012, 2012
Proceedings of the AMIA 2012, 2012
MedEx-UIMA - An Open-Source System for Medication Information Extraction from Clinical Text.
Proceedings of the AMIA 2012, 2012
A Study of Transportability of an Existing Smoking Status Detection Module across Institutions.
Proceedings of the AMIA 2012, 2012
Extracting Semantic Lexicons from Discharge Summaries using Machine Learning and the C-Value Method.
Proceedings of the AMIA 2012, 2012
2011
Applying semantic-based probabilistic context-free grammar to medical language processing - A preliminary study on parsing medication sentences.
J. Biomed. Informatics, 2011
Facilitating pharmacogenetic studies using electronic health records and natural-language processing: a case study of warfarin.
J. Am. Medical Informatics Assoc., 2011
Data from clinical notes: a perspective on the tension between structure and flexible documentation.
J. Am. Medical Informatics Assoc., 2011
A study of machine-learning-based approaches to extract clinical entities and their assertions from discharge summaries.
J. Am. Medical Informatics Assoc., 2011
Proceedings of the 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2011
2010
Application of information technology: MedEx: a medication information extraction system for clinical narratives.
J. Am. Medical Informatics Assoc., 2010
Integrating existing natural language processing tools for medication extraction from discharge summaries.
J. Am. Medical Informatics Assoc., 2010
Extracting timing and status descriptors for colonoscopy testing from electronic medical records.
J. Am. Medical Informatics Assoc., 2010
Identifying potential drugs that induce QT prolongation using electronic medical records.
BMC Bioinform., 2010
Recognizing Medication related Entities in Hospital Discharge Summaries using Support Vector Machine.
Proceedings of the COLING 2010, 2010
2009
Research Paper: Methods for Building Sense Inventories of Abbreviations in Clinical Notes.
J. Am. Medical Informatics Assoc., 2009
Development of a Natural Language Processing System to Identify Timing and Status of Colonoscopy Testing in Electronic Medical Records.
Proceedings of the AMIA 2009, 2009
2008
Research Paper: Automated Acquisition of Disease-Drug Knowledge from Biomedical and Clinical Documents: An Initial Study.
J. Am. Medical Informatics Assoc., 2008
Proceedings of the AMIA 2008, 2008
2007
J. Biomed. Informatics, 2007
Using contextual and lexical features to restructure and validate the classification of biomedical concepts.
BMC Bioinform., 2007
Proceedings of the MEDINFO 2007 - Proceedings of the 12th World Congress on Health (Medical) Informatics, 2007
Proceedings of the Biological, translational, and clinical language processing, 2007
2006
Machine learning and word sense disambiguation in the biomedical domain: design and evaluation issues.
BMC Bioinform., 2006
A Natural Language Processing (NLP) Tool to Assist in the Curation Of the Laboratory Mouse Tumor Biology Database.
Proceedings of the AMIA 2006, 2006
2004
Proceedings of the MEDINFO 2004, 2004
2003
Proceedings of the AMIA 2003, 2003