Carlos F. Lopez

According to our database, Carlos F. Lopez authored at least 10 papers between 2017 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2023

Model certainty in cellular network-driven processes with missing data.

Michael W. Irvin, Arvind Ramanathan, Carlos F. Lopez

PLoS Comput. Biol., 2023

Unified tumor growth mechanisms from multimodel inference and dataset integration.

Samantha P. Beik, Leonard A. Harris, Michael A. Kochen, Julien Sage, Vito Quaranta, Carlos F. Lopez

PLoS Comput. Biol., 2023

A dynamical low-rank approach to solve the chemical master equation for biological reaction networks.

Martina Prugger, Lukas Einkemmer, Carlos F. Lopez

J. Comput. Phys., 2023

2022

<i>Microbench:</i> automated metadata management for systems biology benchmarking and reproducibility in Python.

Alexander L. R. Lubbock, Carlos F. Lopez

Bioinform., October, 2022

2021

Unsupervised logic-based mechanism inference for network-driven biological processes.

Martina Prugger, Lukas Einkemmer, Samantha P. Beik, Perry T. Wasdin, Leonard A. Harris, Carlos F. Lopez

PLoS Comput. Biol., 2021

Thunor: visualization and analysis of high-throughput dose-response datasets.

Alexander L. R. Lubbock, Leonard A. Harris, Vito Quaranta, Darren R. Tyson, Carlos F. Lopez

Nucleic Acids Res., 2021

2019

Systems-level network modeling of Small Cell Lung Cancer subtypes identifies master regulators and destabilizers.

David J. Wooten, Sarah M. Groves, Darren R. Tyson, Qi Liu, Jing S. Lim, Réka Albert, Carlos F. Lopez, Julien Sage, Vito Quaranta

PLoS Comput. Biol., 2019

2018

PyDREAM: high-dimensional parameter inference for biological models in python.

Erin M. Shockley, Jasper A. Vrugt, Carlos F. Lopez

Bioinform., 2018

2017

Activated Oncogenic Pathway Modifies Iron Network in Breast Epithelial Cells: A Dynamic Modeling Perspective.

Julia Chifman, Seda Arat, Zhiyong Deng, Erica Lemler, James C. Pino, Leonard A. Harris, Michael A. Kochen, Carlos F. Lopez, Steven A. Akman, Frank M. Torti, Suzy V. Torti, Reinhard C. Laubenbacher

PLoS Comput. Biol., 2017

GPU-powered model analysis with PySB/cupSODA.

Leonard A. Harris, Marco S. Nobile, James C. Pino, Alexander L. R. Lubbock, Daniela Besozzi, Giancarlo Mauri, Paolo Cazzaniga, Carlos F. Lopez

Bioinform., 2017