Leonard A. Harris

According to our database, Leonard A. Harris authored at least 11 papers between 2008 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2023

Unified tumor growth mechanisms from multimodel inference and dataset integration.

Samantha P. Beik, Leonard A. Harris, Michael A. Kochen, Julien Sage, Vito Quaranta, Carlos F. Lopez

PLoS Comput. Biol., 2023

2021

Unsupervised logic-based mechanism inference for network-driven biological processes.

Martina Prugger, Lukas Einkemmer, Samantha P. Beik, Perry T. Wasdin, Leonard A. Harris, Carlos F. Lopez

PLoS Comput. Biol., 2021

Thunor: visualization and analysis of high-throughput dose-response datasets.

Alexander L. R. Lubbock, Leonard A. Harris, Vito Quaranta, Darren R. Tyson, Carlos F. Lopez

Nucleic Acids Res., 2021

2020

Systems biology markup language (SBML) level 3 package: multistate, multicomponent and multicompartment species, version 1, release 2.

Fengkai Zhang, Lucian P. Smith, Michael L. Blinov, James R. Faeder, William S. Hlavacek, José Juan Tapia, Sarah M. Keating, Nicolas Rodriguez, Andreas Dräger, Leonard A. Harris, Andrew Finney, Bin Hu, Michael Hucka, Martin Meier-Schellersheim

J. Integr. Bioinform., 2020

2017

Activated Oncogenic Pathway Modifies Iron Network in Breast Epithelial Cells: A Dynamic Modeling Perspective.

Julia Chifman, Seda Arat, Zhiyong Deng, Erica Lemler, James C. Pino, Leonard A. Harris, Michael A. Kochen, Carlos F. Lopez, Steven A. Akman, Frank M. Torti, Suzy V. Torti, Reinhard C. Laubenbacher

PLoS Comput. Biol., 2017

GPU-powered model analysis with PySB/cupSODA.

Leonard A. Harris, Marco S. Nobile, James C. Pino, Alexander L. R. Lubbock, Daniela Besozzi, Giancarlo Mauri, Paolo Cazzaniga, Carlos F. Lopez

Bioinform., 2017

2016

BioNetGen 2.2: advances in rule-based modeling.

Leonard A. Harris, Justin S. Hogg, José Juan Tapia, John A. P. Sekar, Sanjana Gupta, Ilya Korsunsky, Arshi Arora, Dipak Barua, Robert P. Sheehan, James R. Faeder

Bioinform., 2016

2014

Exact Hybrid Particle/Population Simulation of Rule-Based Models of Biochemical Systems.

Justin S. Hogg, Leonard A. Harris, Lori J. Stover, Niketh S. Nair, James R. Faeder

PLoS Comput. Biol., 2014

MOSBIE: a tool for comparison and analysis of rule-based biochemical models.

John E. Wenskovitch, Leonard A. Harris, José Juan Tapia, James R. Faeder, G. Elisabeta Marai

BMC Bioinform., 2014

2009

Compartmental Rule-based Modeling of Biochemical Systems.

Leonard A. Harris, Justin S. Hogg, James R. Faeder

Proceedings of the 2009 Winter Simulation Conference, 2009

2008

Statistical Model Checking in BioLab: Applications to the Automated Analysis of T-Cell Receptor Signaling Pathway.

Edmund M. Clarke, James R. Faeder, Christopher James Langmead, Leonard A. Harris, Sumit Kumar Jha, Axel Legay

Proceedings of the Computational Methods in Systems Biology, 6th International Conference, 2008