Reinhard C. Laubenbacher

According to our database1, Reinhard C. Laubenbacher authored at least 53 papers between 1999 and 2019.

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Bibliography

2019
The Dynamics of Canalizing Boolean Networks.
CoRR, 2019

Dynamics of semilattice networks with strongly connected dependency graph.
Automatica, 2019

2018
Applications of network analysis to routinely collected health care data: a systematic review.
JAMIA, 2018

The innate immune response to ischemic injury: a multiscale modeling perspective.
BMC Systems Biology, 2018

2017
Multistate nested canalizing functions and their networks.
Theor. Comput. Sci., 2017

Activated Oncogenic Pathway Modifies Iron Network in Breast Epithelial Cells: A Dynamic Modeling Perspective.
PLoS Computational Biology, 2017

2016
A computational model of invasive aspergillosis in the lung and the role of iron.
BMC Systems Biology, 2016

Identification of control targets in Boolean molecular network models via computational algebra.
BMC Systems Biology, 2016

AlgoRun: a Docker-based packaging system for platform-agnostic implemented algorithms.
Bioinformatics, 2016

2015
Dimension Reduction of Large Sparse AND-NOT Network Models.
Electr. Notes Theor. Comput. Sci., 2015

Iron acquisition and oxidative stress response in aspergillus fumigatus.
BMC Systems Biology, 2015

2014
Evolutionary events in a mathematical sciences research collaboration network.
Scientometrics, 2014

Optimization of Agent-Based Models: Scaling Methods and Heuristic Algorithms.
J. Artificial Societies and Social Simulation, 2014

Structure and dynamics of acyclic networks.
Discrete Event Dynamic Systems, 2014

An Algebra-Based Method for Inferring Gene Regulatory Networks.
BMC Systems Biology, 2014

Steady state analysis of Boolean molecular network models via model reduction and computational algebra.
BMC Bioinformatics, 2014

Evolving Collaboration Patterns in Medical Research.
Proceedings of the AMIA 2014, 2014

2013
Boolean nested canalizing functions: A comprehensive analysis.
Theor. Comput. Sci., 2013

Dimension Reduction of Large AND-NOT Network Models.
CoRR, 2013

2012
Modeling stochasticity and variability in gene regulatory networks.
EURASIP J. Bioinformatics and Systems Biology, 2012

2011
Parameter estimation for Boolean models of biological networks.
Theor. Comput. Sci., 2011

Nested Canalyzing Functions And Their Average Sensitivities
CoRR, 2011

ADAM: Analysis of Discrete Models of Biological Systems Using Computer Algebra.
BMC Bioinformatics, 2011

2010
Discretization of Time Series Data.
Journal of Computational Biology, 2010

A Mathematical Framework for Agent Based Models of Complex Biological Networks
CoRR, 2010

Polynomial algebra of discrete models in systems biology.
Bioinformatics, 2010

2009
Agent Based Modeling, Mathematical Formalism for.
Proceedings of the Encyclopedia of Complexity and Systems Science, 2009

Computer Algebra in Systems Biology.
The American Mathematical Monthly, 2009

Computeralgebra in der Systembiologie.
Informatik Spektrum, 2009

2008
Using Formal Concept Analysis for microarray Data Comparison.
J. Bioinformatics and Computational Biology, 2008

A mathematical formalism for agent-based modeling
CoRR, 2008

Applications of the gröbner fan to gene network reconstruction (abstract only).
ACM Comm. Computer Algebra, 2008

Stabilizing and Destabilizing Effects of Embedding 3-Node Subgraphs on the State Space of Boolean Networks.
Proceedings of the Cellular Automata, 2008

2007
Simulating Epstein-Barr virus infection with C-ImmSim.
Bioinformatics, 2007

Reverse-engineering of polynomial dynamical systems.
Adv. Appl. Math., 2007

A Gröbner fan method for biochemical network modeling.
Proceedings of the Symbolic and Algebraic Computation, International Symposium, 2007

Discrete Models of Biochemical Networks: The Toric Variety of Nested Canalyzing Functions.
Proceedings of the Algebraic Biology, Second International Conference, 2007

2006
Update schedules of sequential dynamical systems.
Discrete Applied Mathematics, 2006

Monomial Dynamical Systems over Finite Fields.
Complex Systems, 2006

Sequential dynamical systems over words.
Applied Mathematics and Computation, 2006

2005
Perspectives on A-homotopy theory and its applications.
Discrete Mathematics, 2005

2004
PathSim visualizer: an Information-Rich Virtual Environment framework for systems biology.
Proceedings of the Proceeding of the Ninth International Conference on 3D Web Technology, 2004

2003
The Sibirsky component of the center variety of polynomial differential systems.
J. Symb. Comput., 2003

Decomposition and simulation of sequential dynamical systems.
Adv. Appl. Math., 2003

A computer algebra approach to biological systems.
Proceedings of the Symbolic and Algebraic Computation, 2003

2001
Classification of Finite Dynamical Systems
CoRR, 2001

Equivalence Relations on Finite Dynamical Systems.
Adv. Appl. Math., 2001

Foundations of a Connectivity Theory for Simplicial Complexes.
Adv. Appl. Math., 2001

Generic ideals and Moreno-Socías conjucture.
Proceedings of the 2001 International Symposium on Symbolic and Algebraic Computation, 2001

2000
An Algorithm for the Quillen-Suslin Theorem for Quotients of Polynomial Rings by Monomial Ideals.
J. Symb. Comput., 2000

Permanental Ideals.
J. Symb. Comput., 2000

Special Issue on Symbolic Computation in Algebra, Analysis, and Geometry - Foreword of the Guest Editors.
J. Symb. Comput., 2000

1999
Monomial Orderings, Rewriting Systems, and Gröbner Bases for the Commutator Ideal of a Free Algebra.
J. Symb. Comput., 1999


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