Qi Liu

Orcid: 0000-0001-8892-7078

Affiliations:
  • Vanderbilt University Medical Center, Department of Biostatistics, Nashville, TN, USA (since 2013)
  • Chinese Academy of Sciences, Shanghai Institutes for Biological Sciences, Bioinformation Center, Shanghai, China
  • Shanghai Jiao Tong University, College of Life Science and Biotechnology, Shanghai, China (PhD 2003)


According to our database1, Qi Liu authored at least 38 papers between 2003 and 2024.

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Bibliography

2024
FindAdapt: A python package for fast and accurate adapter detection in small RNA sequencing.
PLoS Comput. Biol., January, 2024

2023
Cross-scale Multi-instance Learning for Pathological Image Diagnosis.
CoRR, 2023

Feasibility of Universal Anomaly Detection Without Knowing the Abnormality in Medical Images.
Proceedings of the Medical Image Learning with Limited and Noisy Data, 2023

2022
Dysregulated ligand-receptor interactions from single-cell transcriptomics.
Bioinform., 2022

Quantifying and correcting slide-to-slide variation in multiplexed immunofluorescence images.
Bioinform., 2022

Comprehensive evaluation of noise reduction methods for single-cell RNA sequencing data.
Briefings Bioinform., 2022

Cross-Scale Attention Guided Multi-instance Learning for Crohn's Disease Diagnosis with Pathological Images.
Proceedings of the Multiscale Multimodal Medical Imaging - Third International Workshop, 2022

MxIF Q-score: Biology-Informed Quality Assurance for Multiplexed Immunofluorescence Imaging.
Proceedings of the Medical Optical Imaging and Virtual Microscopy Image Analysis, 2022

2019
Systems-level network modeling of Small Cell Lung Cancer subtypes identifies master regulators and destabilizers.
PLoS Comput. Biol., 2019

HACER: an atlas of human active enhancers to interpret regulatory variants.
Nucleic Acids Res., 2019

scRNABatchQC: multi-samples quality control for single cell RNA-seq data.
Bioinform., 2019

2017
A systematic analysis of FDA-approved anticancer drugs.
BMC Syst. Biol., 2017

Investigating MicroRNA and transcription factor co-regulatory networks in colorectal cancer.
BMC Bioinform., 2017

2016
Proceedings of the 15th Annual UT-KBRIN Bioinformatics Summit 2016: Cadiz, KY, USA. 8-10 April 2016.
BMC Bioinform., August, 2016

An improved method to construct basic probability assignment based on the confusion matrix for classification problem.
Inf. Sci., 2016

Self-adaptive win-stay-lose-shift reference selection mechanism promotes cooperation on a square lattice.
Appl. Math. Comput., 2016

Matrix games with payoffs of belief structures.
Appl. Math. Comput., 2016

2015
Impact of Preference and Equivocators on Opinion Dynamics with Evolutionary Game Framework.
CoRR, 2015

Quantum games of opinion formation based on the Marinatto-Weber quantum game scheme.
CoRR, 2015

A quantum extension to inspection game.
CoRR, 2015

Newborns prediction based on a belief Markov chain model.
Appl. Intell., 2015

2014
A belief-based evolutionarily stable strategy.
CoRR, 2014

Generalized prisoner's dilemma.
CoRR, 2014

CLIP-EZ: a computational tool for HITS-CLIP data analysis.
BMC Bioinform., 2014

2013
Gene and isoform expression signatures associated with tumor stage in kidney renal clear cell carcinoma.
BMC Syst. Biol., 2013

2011
The role of Hepatitis C Virus in the dynamic protein interaction networks of hepatocellular cirrhosis and carcinoma.
Int. J. Comput. Biol. Drug Des., 2011

2010
Erratum to "Combining belief functions based on distance of evidence" [Decision Support Systems Volume(38/3)489-493].
Decis. Support Syst., 2010

TF-centered downstream gene set enrichment analysis: Inference of causal regulators by integrating TF-DNA interactions and protein post-translational modifications information.
BMC Bioinform., 2010

Dysfunctional gene/protein networks in hepatitis C virus-induced hepatocellular cirrhosis and carcinoma.
Proceedings of the First ACM International Conference on Bioinformatics and Computational Biology, 2010

2007
InPrePPI: an integrated evaluation method based on genomic context for predicting protein-protein interactions in prokaryotic genomes.
BMC Bioinform., 2007

2006
Insights into the Coupling of Duplication Events and Macroevolution from an Age Profile of Animal Transmembrane Gene Families.
PLoS Comput. Biol., 2006

2005
A topsis-based centroid-index ranking method of fuzzy numbers and its application in decision-making.
Cybern. Syst., 2005

Refined phylogenetic profiles method for predicting protein-protein interactions.
Bioinform., 2005

2004
A new similarity measure of generalized fuzzy numbers and its application to pattern recognition.
Pattern Recognit. Lett., 2004

Combining belief functions based on distance of evidence.
Decis. Support Syst., 2004

Scoring hidden Markov models to discriminate -barrel membrane proteins.
Comput. Biol. Chem., 2004

2003
Identification of -barrel membrane proteins based on amino acid composition properties and predicted secondary structure.
Comput. Biol. Chem., 2003

A HMM-based method to predict the transmembrane regions of \beta-barrel membrane proteins.
Comput. Biol. Chem., 2003


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