Chenrui Duan

According to our database, Chenrui Duan authored at least 11 papers between 2020 and 2025.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2025

FGeneBERT: function-driven pre-trained gene language model for metagenomics.

Chenrui Duan, Zelin Zang, Yongjie Xu, Hang He, Siyuan Li, Zihan Liu, Zhen Lei, Ju-Sheng Zheng, Stan Z. Li

Briefings Bioinform., November, 2025

MDTree: A Masked Dynamic Autoregressive Model for Phylogenetic Inference.

Zelin Zang, Chenrui Duan, Siyuan Li, Jinlin Wu, BingoWing-Kuen Ling, Fuji Yang, Jiebo Luo, Zhen Lei, Stan Z. Li

Trans. Mach. Learn. Res., 2025

A Review of BioTree Construction in the Context of Information Fusion: Priors, Methods, Applications and Trends.

Zelin Zang, Yongjie Xu, Chenrui Duan, Yue Yuan, Yue Shen, Jinlin Wu, Zhen Lei, Stan Z. Li

Inf. Fusion, 2025

MuST: multiple-modality structure transformation for single-cell spatial transcriptomics.

Zelin Zang, Liangyu Li, Yongjie Xu, Chenrui Duan, Yue Shen, Yi Sun, Zhen Lei, Stan Z. Li

Briefings Bioinform., 2025

2024

A Review of Artificial Intelligence based Biological-Tree Construction: Priorities, Methods, Applications and Trends.

Zelin Zang, Yongjie Xu, Chenrui Duan, Jinlin Wu, Stan Z. Li, Zhen Lei

CoRR, 2024

FGBERT: Function-Driven Pre-trained Gene Language Model for Metagenomics.

Chenrui Duan, Zelin Zang, Yongjie Xu, Hang He, Zihan Liu, Zijia Song, Ju-Sheng Zheng, Stan Z. Li

CoRR, 2024

Must: Maximizing Latent Capacity of Spatial Transcriptomics Data.

Zelin Zang, Liangyu Li, Yongjie Xu, Chenrui Duan, Kai Wang, Yang You, Yi Sun, Stan Z. Li

CoRR, 2024

PhyloGen: Language Model-Enhanced Phylogenetic Inference via Graph Structure Generation.

Chenrui Duan, Zelin Zang, Siyuan Li, Yongjie Xu, Stan Z. Li

Proceedings of the Advances in Neural Information Processing Systems 37: Annual Conference on Neural Information Processing Systems 2024, 2024

MuST: Maximizing the Latent Capacity of Spatial Transcriptomics Data with Multi-modality Structure Transformation.

Zelin Zang, Liangyu Li, Yongjie Xu, Jiahao Li, Chenrui Duan, Yi Sun, Zhen Lei, Stan Z. Li

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2024

2021

Video Captioning in Compressed Video.

Mingjian Zhu, Chenrui Duan, Changbin Yu

CoRR, 2021

2020

GVFOM: a novel external force for active contour based image segmentation.

Ziyang Zhang, Chenrui Duan, Tao Lin, Shoujun Zhou, Yuanquan Wang, Xuedong Gao

Inf. Sci., 2020