Christian N. S. Pedersen

According to our database, Christian N. S. Pedersen authored at least 55 papers between 1998 and 2018.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2018

Benchmarking the HLA typing performance of Polysolver and Optitype in 50 Danish parental trios.

Maria Luisa Matey-Hernandez, Lasse Maretty, Jacob Malte Jensen, Bent Petersen, Jonas Andreas Sibbesen, Siyang Liu, Palle Villesen, Laurits Skov, Kirstine Belling, Christian Theil Have, José M. G. Izarzugaza, Marie Grosjean, Jette Bork-Jensen, Jakob Grove, Thomas D. Als, Shujia Huang, Yuqi Chang, Ruiqi Xu, Weijian Ye, Junhua Rao, Xiaosen Guo, Jihua Sun, Hongzhi Cao, Chen Ye, John van Beusekom, Thomas Espeseth, Esben N. Flindt, Rune M. Friborg, Anders E. Halager, Stephanie Le Hellard, Christina M. Hultman, Francesco Lescai, Shengting Li, Ole Lund, Peter Løngreen, Thomas Mailund, Ole Mors, Christian N. S. Pedersen, Thomas Sicheritz-Pontén, Patrick F. Sullivan, Ali Syed, David Westergaard, Rachita Yadav, Ning Li, Xun Xu, Torben Hansen, Anders Krogh, Lars Bolund, Thorkild I. A. Sørensen, Oluf Pedersen, Ramneek Gupta, Simon Rasmussen, Søren Besenbacher, Anders D. Børglum, Jun Wang, Hans Eiberg, Karsten Kristiansen, Mikkel Heide Schierup, Søren Brunak

BMC Bioinform., 2018

2017

Sequencing and <i>de novo</i> assembly of 150 genomes from Denmark as a population reference.

Lasse Maretty, Jacob Malte Jensen, Bent Petersen, Jonas Andreas Sibbesen, Siyang Liu, Palle Villesen, Laurits Skov, Kirstine Belling, Christian Theil Have, José M. G. Izarzugaza, Marie Grosjean, Jette Bork-Jensen, Jakob Grove, Thomas D. Als, Shujia Huang, Yuqi Chang, Ruiqi Xu, Weijian Ye, Junhua Rao, Xiaosen Guo, Jihua Sun, Hongzhi Cao, Chen Ye, John van Beusekom, Thomas Espeseth, Esben N. Flindt, Rune M. Friborg, Anders E. Halager, Stephanie Le Hellard, Christina M. Hultman, Francesco Lescai, Shengting Li, Ole Lund, Peter Løngreen, Thomas Mailund, Maria Luisa Matey-Hernandez, Ole Mors, Christian N. S. Pedersen, Thomas Sicheritz-Pontén, Patrick F. Sullivan, Ali Syed, David Westergaard, Rachita Yadav, Ning Li, Xun Xu, Torben Hansen, Anders Krogh, Lars Bolund, Thorkild I. A. Sørensen, Oluf Pedersen, Ramneek Gupta, Simon Rasmussen, Søren Besenbacher, Anders D. Børglum, Jun Wang, Hans Eiberg, Karsten Kristiansen, Søren Brunak, Mikkel Heide Schierup

Nat., 2017

Prediction of Primary Tumors in Cancers of Unknown Primary.

Dan Søndergaard, Svend V. Nielsen, Christian N. S. Pedersen, Søren Besenbacher

J. Integr. Bioinform., 2017

2016

Computational discovery of specificity-conferring sites in non-ribosomal peptide synthetases.

Michael Knudsen, Dan Søndergaard, Claus Tofting-Olesen, Frederik T. Hansen, Ditlev Egeskov Brodersen, Christian N. S. Pedersen

Bioinform., 2016

2014

tqDist: a library for computing the quartet and triplet distances between binary or general trees.

Andreas Sand, Morten Kragelund Holt, Jens Johansen, Gerth Stølting Brodal, Thomas Mailund, Christian N. S. Pedersen

Bioinform., 2014

2013

GPU-Accelerated High-Accuracy Molecular Docking Using Guided Differential Evolution.

Martin Simonsen, Mikael H. Christensen, René Thomsen, Christian N. S. Pedersen

Proceedings of the Massively Parallel Evolutionary Computation on GPGPUs, 2013

Characterising RNA secondary structure space using information entropy.

Zsuzsanna Sükösd, Bjarne Knudsen, James W. J. Anderson, Ádám Novák, Jørgen Kjems, Christian N. S. Pedersen

BMC Bioinform., 2013

zipHMMlib: a highly optimised HMM library exploiting repetitions in the input to speed up the forward algorithm.

Andreas Sand, Martin Kristiansen, Christian N. S. Pedersen, Thomas Mailund

BMC Bioinform., 2013

A practical O(n log² n) time algorithm for computing the triplet distance on binary trees.

Andreas Sand, Gerth Stølting Brodal, Rolf Fagerberg, Christian N. S. Pedersen, Thomas Mailund

BMC Bioinform., 2013

Efficient algorithms for computing the triplet and quartet distance between trees of arbitrary degree.

Gerth Stølting Brodal, Rolf Fagerberg, Thomas Mailund, Christian N. S. Pedersen, Andreas Sand

Proceedings of the Twenty-Fourth Annual ACM-SIAM Symposium on Discrete Algorithms, 2013

2012

PPfold 3.0: fast RNA secondary structure prediction using phylogeny and auxiliary data.

Zsuzsanna Sükösd, Bjarne Knudsen, Jørgen Kjems, Christian N. S. Pedersen

Bioinform., 2012

UniMoG - a unifying framework for genomic distance calculation and sorting based on DCJ.

Rolf Hilker, Corinna Sickinger, Christian N. S. Pedersen, Jens Stoye

Bioinform., 2012

<i>shortran</i>: a pipeline for small RNA-seq data analysis.

Vikas Gupta, Katharina Markmann, Christian N. S. Pedersen, Jens Stougaard, Stig U. Andersen

Bioinform., 2012

2011

Molecular Docking with Ligand Attached Water Molecules.

Mette Alstrup Lie, René Thomsen, Christian N. S. Pedersen, Birgit Schiøtt, Mikael H. Christensen

J. Chem. Inf. Model., 2011

Using Inverted Indices for Accelerating LINGO Calculations.

Thomas Greve Kristensen, Jesper Buus Nielsen, Christian N. S. Pedersen

J. Chem. Inf. Model., 2011

A sub-cubic time algorithm for computing the quartet distance between two general trees.

Jesper Buus Nielsen, Anders K. Kristensen, Thomas Mailund, Christian N. S. Pedersen

Algorithms Mol. Biol., 2011

Rapid computation of distance estimators from nucleotide and amino acid alignments.

Martin Simonsen, Christian N. S. Pedersen

Proceedings of the 2011 ACM Symposium on Applied Computing (SAC), TaiChung, Taiwan, March 21, 2011

GPU-accelerated high-accuracy molecular docking using guided differential evolution: real world applications.

Martin Simonsen, Christian N. S. Pedersen, Mikael H. Christensen, René Thomsen

Proceedings of the 13th Annual Genetic and Evolutionary Computation Conference, 2011

2010

A tree-based method for the rapid screening of chemical fingerprints.

Thomas Greve Kristensen, Jesper Buus Nielsen, Christian N. S. Pedersen

Algorithms Mol. Biol., 2010

Data Structures for Accelerating Tanimoto Queries on Real Valued Vectors.

Thomas Greve Kristensen, Christian N. S. Pedersen

Proceedings of the Algorithms in Bioinformatics, 10th International Workshop, 2010

Inference of Large Phylogenies Using Neighbour-Joining.

Martin Simonsen, Thomas Mailund, Christian N. S. Pedersen

Proceedings of the Biomedical Engineering Systems and Technologies, 2010

Building Very Large Neighbour-joining Trees.

Martin Simonsen, Thomas Mailund, Christian N. S. Pedersen

Proceedings of the BIOINFORMATICS 2010, 2010

2009

A fast algorithm for genome-wide haplotype pattern mining.

Søren Besenbacher, Christian N. S. Pedersen, Thomas Mailund

BMC Bioinform., 2009

A Quadratic Time Algorithm for Computing the Quartet Distance between Two General Trees.

Thomas Mailund, Jesper Buus Nielsen, Christian N. S. Pedersen

Proceedings of the International Joint Conferences on Bioinformatics, 2009

Optimal Overlay of Ligands with Flexible Bonds Using Differential Evolution.

Thomas Greve Kristensen, Christian N. S. Pedersen

Proceedings of the International Joint Conferences on Bioinformatics, 2009

2008

Computing the All-Pairs Quartet Distance on a Set of Evolutionary Trees.

Martin Stig Stissing, Thomas Mailund, Christian N. S. Pedersen, Gerth Stølting Brodal, Rolf Fagerberg

J. Bioinform. Comput. Biol., 2008

Rapid Neighbour-Joining.

Martin Simonsen, Thomas Mailund, Christian N. S. Pedersen

Proceedings of the Algorithms in Bioinformatics, 8th International Workshop, 2008

2007

Experiences with GeneRecon on MiG.

Thomas Mailund, Christian N. S. Pedersen, Jonas Bardino, Brian Vinter, Henrik Hoey Karlsen

Future Gener. Comput. Syst., 2007

Computing the Quartet Distance Between Evolutionary Trees of Bounded Degree.

Martin Stig Stissing, Christian N. S. Pedersen, Thomas Mailund, Gerth Stølting Brodal, Rolf Fagerberg

Proceedings of 5th Asia-Pacific Bioinformatics Conference, 2007

2006

Recrafting the neighbor-joining method.

Thomas Mailund, Gerth Stølting Brodal, Rolf Fagerberg, Christian N. S. Pedersen, Derek Phillips

BMC Bioinform., 2006

GeneRecon - a coalescent based tool for fine-scale association mapping.

Thomas Mailund, Mikkel H. Schierup, Christian N. S. Pedersen, Jesper N. Madsen, Jotun Hein, Leif Schauser

Bioinform., 2006

Fast calculation of the quartet distance between trees of arbitrary degrees.

Chris Christiansen, Thomas Mailund, Christian N. S. Pedersen, Martin Randers, Martin Stig Stissing

Algorithms Mol. Biol., 2006

2005

CoaSim: A flexible environment for simulating genetic data under coalescent models.

Thomas Mailund, Mikkel H. Schierup, Christian N. S. Pedersen, Peter J. M. Mechlenborg, Jesper N. Madsen, Leif Schauser

BMC Bioinform., 2005

RBT - a tool for building refined Buneman trees.

Søren Besenbacher, Thomas Mailund, Lasse Westh-Nielsen, Christian N. S. Pedersen

Bioinform., 2005

Computing the Quartet Distance Between Trees of Arbitrary Degree.

Chris Christiansen, Thomas Mailund, Christian N. S. Pedersen, Martin Randers

Proceedings of the Algorithms in Bioinformatics, 5th International Workshop, 2005

Initial Experiences with GeneRecon on MiG.

Thomas Mailund, Christian N. S. Pedersen, Jonas Bardino, Brian Vinter, Henrik Hoey Karlsen

Proceedings of The 2005 International Conference on Grid Computing and Applications, 2005

2004

QuickJoin - fast neighbour-joining tree reconstruction.

Thomas Mailund, Christian N. S. Pedersen

Bioinform., 2004

QDist-quartet distance between evolutionary trees.

Thomas Mailund, Christian N. S. Pedersen

Bioinform., 2004

Computing the Quartet Distance between Evolutionary Trees in Time O(n log n).

Gerth Stølting Brodal, Rolf Fagerberg, Christian N. S. Pedersen

Algorithmica, 2004

2003

Computing Refined Buneman Trees in Cubic Time.

Gerth Stølting Brodal, Rolf Fagerberg, Anna Östlin, Christian N. S. Pedersen, S. Srinivasa Rao

Proceedings of the Algorithms in Bioinformatics, Third International Workshop, 2003

2002

The consensus string problem and the complexity of comparing hidden Markov models.

Rune B. Lyngsø, Christian N. S. Pedersen

J. Comput. Syst. Sci., 2002

Comparative Methods for Gene Structure Prediction in Homologous Sequences.

Christian N. S. Pedersen, Tejs Scharling

Proceedings of the Algorithms in Bioinformatics, Second International Workshop, 2002

Solving the String Statistics Problem in Time O(n log n).

Gerth Stølting Brodal, Rune B. Lyngsø, Anna Östlin, Christian N. S. Pedersen

Proceedings of the Automata, Languages and Programming, 29th International Colloquium, 2002

2001

Comparing a Hidden Markov Model and a Stochastic Context-Free Grammar.

Arun K. Jagota, Rune B. Lyngsø, Christian N. S. Pedersen

Proceedings of the Algorithms in Bioinformatics, First International Workshop, 2001

Complexity of Comparing Hidden Markov Models.

Rune B. Lyngsø, Christian N. S. Pedersen

Proceedings of the Algorithms and Computation, 12th International Symposium, 2001

Computing the Quartet Distance between Evolutionary Trees in Time O(n log² n).

Gerth Stølting Brodal, Rolf Fagerberg, Christian N. S. Pedersen

Proceedings of the Algorithms and Computation, 12th International Symposium, 2001

The Complexity of Constructing Evolutionary Trees Using Experiments.

Gerth Stølting Brodal, Rolf Fagerberg, Christian N. S. Pedersen, Anna Östlin

Proceedings of the Automata, Languages and Programming, 28th International Colloquium, 2001

2000

RNA Pseudoknot Prediction in Energy-Based Models.

Rune B. Lyngsø, Christian N. S. Pedersen

J. Comput. Biol., 2000

Pseudoknots in RNA secondary structures.

Rune B. Lyngsø, Christian N. S. Pedersen

Proceedings of the Fourth Annual International Conference on Computational Molecular Biology, 2000

Finding Maximal Quasiperiodicities in Strings.

Gerth Stølting Brodal, Christian N. S. Pedersen

Proceedings of the Combinatorial Pattern Matching, 11th Annual Symposium, 2000

1999

Fast evaluation of internal loops in RNA secondary structure prediction.

Rune B. Lyngsø, Michael Zuker, Christian N. S. Pedersen

Bioinform., 1999

Internal loops in RNA secondary structure prediction.

Rune B. Lyngsø, Michael Zuker, Christian N. S. Pedersen

Proceedings of the Third Annual International Conference on Research in Computational Molecular Biology, 1999

Metrics and Similarity Measures for Hidden Markov Models.

Rune B. Lyngsø, Christian N. S. Pedersen, Henrik Nielsen

Proceedings of the Seventh International Conference on Intelligent Systems for Molecular Biology, 1999

Finding Maximal Pairs with Bounded Gap.

Gerth Stølting Brodal, Rune B. Lyngsø, Christian N. S. Pedersen, Jens Stoye

Proceedings of the Combinatorial Pattern Matching, 10th Annual Symposium, 1999

1998

Comparison of Coding DNA.

Christian N. S. Pedersen, Rune B. Lyngsø, Jotun Hein

Proceedings of the Combinatorial Pattern Matching, 9th Annual Symposium, 1998