Henrik Nielsen

According to our database, Henrik Nielsen authored at least 24 papers between 1991 and 2024.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2024

SpanSeq: Similarity-based sequence data splitting method for improved development and assessment of deep learning projects.

Alfred Ferrer Florensa, José Juan Almagro Armenteros, Henrik Nielsen, Frank Møller Aarestrup, Philip Thomas Lanken Conradsen Clausen

CoRR, 2024

2022

DeepLoc 2.0: multi-label subcellular localization prediction using protein language models.

Vineet Thumuluri, José Juan Almagro Armenteros, Alexander Rosenberg Johansen, Henrik Nielsen, Ole Winther

Nucleic Acids Res., 2022

NetSurfP-3.0: accurate and fast prediction of protein structural features by protein language models and deep learning.

Magnus Haraldson Høie, Erik Nicolas Kiehl, Bent Petersen, Morten Nielsen, Ole Winther, Henrik Nielsen, Jeppe Hallgren, Paolo Marcatili

Nucleic Acids Res., 2022

NetSolP: predicting protein solubility in Escherichia coli using language models.

Vineet Thumuluri, Hannah-Marie Martiny, José Juan Almagro Armenteros, Jesper Salomon, Henrik Nielsen, Alexander Rosenberg Johansen

Bioinform., 2022

2021

Deep protein representations enable recombinant protein expression prediction.

Hannah-Marie Martiny, José Juan Almagro Armenteros, Alexander Rosenberg Johansen, Jesper Salomon, Henrik Nielsen

Comput. Biol. Chem., 2021

2017

An introduction to deep learning on biological sequence data: examples and solutions.

Vanessa Isabell Jurtz, Alexander Rosenberg Johansen, Morten Nielsen, José Juan Almagro Armenteros, Henrik Nielsen, Casper Kaae Sønderby, Ole Winther, Søren Kaae Sønderby

Bioinform., 2017

DeepLoc: prediction of protein subcellular localization using deep learning.

José Juan Almagro Armenteros, Casper Kaae Sønderby, Søren Kaae Sønderby, Henrik Nielsen, Ole Winther

Bioinform., 2017

2015

Convolutional LSTM Networks for Subcellular Localization of Proteins.

Søren Kaae Sønderby, Casper Kaae Sønderby, Henrik Nielsen, Ole Winther

Proceedings of the Algorithms for Computational Biology, 2015

2014

LocTree3 prediction of localization.

Tatyana Goldberg, Maximilian Hecht, Tobias Hamp, Timothy Karl, Guy Yachdav, Nadeem Ahmed, Uwe Altermann, Philipp Angerer, Sonja Ansorge, Kinga Balasz, Michael Bernhofer, Alexander Betz, Laura Cizmadija, Kieu Trinh Do, Julia Gerke, Robert Greil, Vadim Joerdens, Maximilian Hastreiter, Katharina Hembach, Max Herzog, Maria Kalemanov, Michael Kluge, Alice Meier, Hassan Nasir, Ulrich Neumaier, Verena Prade, Jonas Reeb, Aleksandr Sorokoumov, Ilira Troshani, Susann Vorberg, Sonja Waldraff, Jonas Zierer, Henrik Nielsen, Burkhard Rost

Nucleic Acids Res., 2014

2005

Prediction of twin-arginine signal peptides.

Jannick Dyrløv Bendtsen, Henrik Nielsen, David Widdick, Tracy Palmer, Søren Brunak

BMC Bioinform., 2005

2000

Assessing the accuracy of prediction algorithms for classification: an overview.

Pierre Baldi, Søren Brunak, Yves Chauvin, Claus A. F. Andersen, Henrik Nielsen

Bioinform., 2000

1999

Metrics and Similarity Measures for Hidden Markov Models.

Rune B. Lyngsø, Christian N. S. Pedersen, Henrik Nielsen

Proceedings of the Seventh International Conference on Intelligent Systems for Molecular Biology, 1999

1998

Prediction of Signal Peptides and Signal Anchors by a Hidden Markov Model.

Henrik Nielsen, Anders Krogh

Proceedings of the 6th International Conference on Intelligent Systems for Molecular Biology (ISMB-98), Montréal, Québec, Canada, June 28, 1998

1997

A Neural Network Method for Identification of Prokaryotic and Eukaryotic Signal Peptides and Prediction of their Cleavage Sites.

Henrik Nielsen, Jacob Engelbrecht, Søren Brunak, Gunnar von Heijne

Int. J. Neural Syst., 1997

Neural Network Prediction of Translation Initiation Sites in Eukaryotes: Perspectives for EST and Genome Analysis.

Anders Gorm Pedersen, Henrik Nielsen

Proceedings of the 5th International Conference on Intelligent Systems for Molecular Biology, 1997

1995

Quantization of non-linear predictors in speech coding.

Jes Thyssen, Henrik Nielsen, Steffen Duus Hansen

Proceedings of the 1995 International Conference on Acoustics, 1995

Using Mirror Cameras for Estimating Depth.

Jens Arnspang, Henrik Nielsen, Morten Christensen, Knud Henriksen

Proceedings of the Computer Analysis of Images and Patterns, 6th International Conference, 1995

1994

Non-linear short-term prediction in speech coding.

Jes Thyssen, Henrik Nielsen, Steffen Duus Hansen

Proceedings of ICASSP '94: IEEE International Conference on Acoustics, 1994

1993

Improving the spectral balance of digital speech synthesis applied to a female, synthetic voice.

Ida Frehr, Marianne Elmlund, Henrik Nielsen

Proceedings of the Third European Conference on Speech Communication and Technology, 1993

1992

Sequence of a new snRNA from the ciliate Tetrahymena thermophila.

Henrik Ørum, Henrik Nielsen, Jan Engberg

Nucleic Acids Res., 1992

Comparative study of error correction coding schemes for the GSM half-rate channel.

Henrik Nielsen, Keld B. Mikkelsen, Henrik B. Hansen, Yuhang Wu, Knud J. Larsen, John Aasted Sørensen

Proceedings of the 1992 IEEE International Conference on Acoustics, 1992

Improvements in 2.4 kbps high-quality speech coding.

Jesper Haagen, Henrik Nielsen, Steffen Duus Hansen

Proceedings of the 1992 IEEE International Conference on Acoustics, 1992

1991

High performance coder: a possible candidate for the GSM half-rate system.

Yuhang Wu, Henrik B. Hansen, Knud J. Larsen, Henrik Nielsen, John Aasted Sørensen

Proceedings of the 1991 International Conference on Acoustics, 1991

A 2.4 kbps high-quality speech coder.

Jesper Haagen, Henrik Nielsen, Steffen Duus Hansen

Proceedings of the 1991 International Conference on Acoustics, 1991