# Rune B. Lyngsø

According to our database

Collaborative distances:

^{1}, Rune B. Lyngsø authored at least 30 papers between 1998 and 2016.Collaborative distances:

## Timeline

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Book In proceedings Article PhD thesis Other## Links

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## Bibliography

2016

RNA Secondary Structure Prediction Including Pseudoknots.

Encyclopedia of Algorithms, 2016

RNA Secondary Structure Prediction by Minimum Free Energy.

Encyclopedia of Algorithms, 2016

RNA Secondary Structure Boltzmann Distribution.

Encyclopedia of Algorithms, 2016

2015

Efficient representation of uncertainty in multiple sequence alignments using directed acyclic graphs.

BMC Bioinformatics, 2015

2013

Oxfold: kinetic folding of RNA using stochastic context-free grammars and evolutionary information.

Bioinformatics, 2013

2012

Frnakenstein: multiple target inverse RNA folding.

BMC Bioinformatics, 2012

Evolving stochastic context-free grammars for RNA secondary structure prediction.

BMC Bioinformatics, 2012

2010

Dynamics based alignment of proteins: an alternative approach to quantify dynamic similarity.

BMC Bioinformatics, 2010

2008

RNA Secondary Structure Prediction Including Pseudoknots.

Proceedings of the Encyclopedia of Algorithms - 2008 Edition, 2008

RNA Secondary Structure Prediction by Minimum Free Energy.

Proceedings of the Encyclopedia of Algorithms - 2008 Edition, 2008

RNA Secondary Structure Boltzmann Distribution.

Proceedings of the Encyclopedia of Algorithms - 2008 Edition, 2008

StatAlign: an extendable software package for joint Bayesian estimation of alignments and evolutionary trees.

Bioinformatics, 2008

Accurate Computation of Likelihoods in the Coalescent with Recombination Via Parsimony.

Proceedings of the Research in Computational Molecular Biology, 2008

2006

Counting All Possible Ancestral Configurations of Sample Sequences in Population Genetics.

IEEE/ACM Trans. Comput. Biology Bioinform., 2006

How Many Transcripts Does It Take to Reconstruct the Splice Graph?

Proceedings of the Algorithms in Bioinformatics, 6th International Workshop, 2006

2005

The FOLDALIGN web server for pairwise structural RNA alignment and mutual motif search.

Nucleic Acids Research, 2005

Pairwise local structural alignment of RNA sequences with sequence similarity less than 40%.

Bioinformatics, 2005

Minimum Recombination Histories by Branch and Bound.

Proceedings of the Algorithms in Bioinformatics, 5th International Workshop, 2005

2004

Complexity of Pseudoknot Prediction in Simple Models.

Proceedings of the Automata, Languages and Programming: 31st International Colloquium, 2004

2002

The consensus string problem and the complexity of comparing hidden Markov models.

J. Comput. Syst. Sci., 2002

Solving the String Statistics Problem in Time O(n log n).

Proceedings of the Automata, Languages and Programming, 29th International Colloquium, 2002

2001

Comparing a Hidden Markov Model and a Stochastic Context-Free Grammar.

Proceedings of the Algorithms in Bioinformatics, First International Workshop, 2001

Complexity of Comparing Hidden Markov Models.

Proceedings of the Algorithms and Computation, 12th International Symposium, 2001

2000

RNA Pseudoknot Prediction in Energy-Based Models.

Journal of Computational Biology, 2000

Pseudoknots in RNA secondary structures.

Proceedings of the Fourth Annual International Conference on Computational Molecular Biology, 2000

1999

Fast evaluation of internal loops in RNA secondary structure prediction.

Bioinformatics, 1999

Internal loops in RNA secondary structure prediction.

Proceedings of the Third Annual International Conference on Research in Computational Molecular Biology, 1999

Metrics and Similarity Measures for Hidden Markov Models.

Proceedings of the Seventh International Conference on Intelligent Systems for Molecular Biology, 1999

Finding Maximal Pairs with Bounded Gap.

Proceedings of the Combinatorial Pattern Matching, 10th Annual Symposium, 1999

1998

Comparison of Coding DNA.

Proceedings of the Combinatorial Pattern Matching, 9th Annual Symposium, 1998