According to our database1, Søren Brunak authored at least 81 papers between 1989 and 2019.
Legend:Book In proceedings Article PhD thesis Other
Incorporating symptom data in longitudinal disease trajectories for more detailed patient stratification.
Int. J. Medical Informatics, 2019
A generic deep convolutional neural network framework for prediction of receptor-ligand interactions - NetPhosPan: application to kinase phosphorylation prediction.
sAOP: linking chemical stressors to adverse outcomes pathway networks.
A comprehensive and quantitative comparison of text-mining in 15 million full-text articles versus their corresponding abstracts.
PLoS Computational Biology, 2018
miRandola 2017: a curated knowledge base of non-invasive biomarkers.
Nucleic Acids Research, 2018
Benchmarking the HLA typing performance of Polysolver and Optitype in 50 Danish parental trios.
BMC Bioinformatics, 2018
Pharos: Collating protein information to shed light on the druggable genome.
Nucleic Acids Research, 2017
Temporal Order of Disease Pairs Affects Subsequent Disease Trajectories: The Case of Diabetes and Sleep Apnea.
Proceedings of the Biocomputing 2017: Proceedings of the Pacific Symposium, 2017
A genomic history of Aboriginal Australia.
Tools and data services registry: a community effort to document bioinformatics resources.
Nucleic Acids Research, 2016
ChemProt-3.0: a global chemical biology diseases mapping.
Disentangling type 2 diabetes and metformin treatment signatures in the human gut microbiota.
Proceedings of the Biocomputing 2015: Proceedings of the Pacific Symposium, 2015
Finding Cervical Cancer Symptoms in Swedish Clinical Text using a Machine Learning Approach and NegEx.
Proceedings of the AMIA 2015, 2015
Addendum: Enterotypes of the human gut microbiome.
Compass: A hybrid method for clinical and biobank data mining.
J. Biomed. Informatics, 2014
Facilitating the use of large-scale biological data and tools in the era of translational bioinformatics.
Briefings in Bioinformatics, 2014
Proceedings of the Biocomputing 2014: Proceedings of the Pacific Symposium, 2014
Negation scope and spelling variation for text-mining of Danish electronic patient records.
Proceedings of the 5th International Workshop on Health Text Mining and Information Analysis, 2014
MetaRanker 2.0: a web server for prioritization of genetic variation data.
Nucleic Acids Research, 2013
ChemProt-2.0: visual navigation in a disease chemical biology database.
Nucleic Acids Research, 2013
Dictionary construction and identification of possible adverse drug events in Danish clinical narrative text.
Question Answering for Health Professionals and Laypersons.
Proceedings of the MEDINFO 2013, 2013
Using Electronic Patient Records to Discover Disease Correlations and Stratify Patient Cohorts.
PLoS Computational Biology, 2011
ChemProt: a disease chemical biology database.
Nucleic Acids Research, 2011
Consistent metagenes from cancer expression profiles yield agent specific predictors of chemotherapy response.
BMC Bioinformatics, 2011
The strength of intron donor splice sites in human genes displays a bell-shaped pattern.
Deciphering Diseases and Biological Targets for Environmental Chemicals using Toxicogenomics Networks.
PLoS Computational Biology, 2010
Cyclebase.org: version 2.0, an updated comprehensive, multi-species repository of cell cycle experiments and derived analysis results.
Nucleic Acids Research, 2010
ImmunoGrid, an integrative environment for large-scale simulation of the immune system for vaccine discovery, design and optimization.
Briefings in Bioinformatics, 2009
Cyclebase.org - a comprehensive multi-organism online database of cell-cycle experiments.
Nucleic Acids Research, 2008
Modeling the adaptive immune system: predictions and simulations.
SNP mining porcine ESTs with MAVIANT, a novel tool for SNP evaluation and annotation.
Proceedings of the Proceedings 15th International Conference on Intelligent Systems for Molecular Biology (ISMB) & 6th European Conference on Computational Biology (ECCB), 2007
PLoS Computational Biology, 2006
Prediction of pH-Dependent Aqueous Solubility of Druglike Molecules.
Journal of Chemical Information and Modeling, 2006
Proceedings of the Proceedings 14th International Conference on Intelligent Systems for Molecular Biology 2006, 2006
Prediction of twin-arginine signal peptides.
BMC Bioinformatics, 2005
Comparison of computational methods for the identification of cell cycle-regulated genes.
Prediction methods and databases within chemoinformatics: emphasis on drugs and drug candidates.
Computational molecular biology, AAAI Press, ISBN: 978-0-262-12280-1, 2005
Coronavirus 3CLpro proteinase cleavage sites: Possible relevance to SARS virus pathology.
BMC Bioinformatics, 2004
Improved prediction of MHC class I and class II epitopes using a novel Gibbs sampling approach.
Representation of Protein-Sequence Information by Amino Acid Subalphabets.
AI Magazine, 2004
MHC Class I Epitope Binding Prediction Trained on Small Data Sets.
Proceedings of the Artificial Immune Systems, Third International Conference, 2004
Selecting Informative Data for Developing Peptide-MHC Binding Predictors Using a Query by Committee Approach.
Neural Computation, 2003
NESbase version 1.0: a database of nuclear export signals.
Nucleic Acids Research, 2003
Prediction of human protein function according to Gene Ontology categories.
Prediction of Protein Secondary Structure at High Accuracy Using a Combination of Many Neural Networks.
Proceedings of the Mathematical Methods for Protein Structure Analysis and Design, 2003
Bias of Purine Stretches in Sequenced Chromosomes.
Computers & Chemistry, 2002
Neural network predicts sequence of TP53 gene based on DNA chip.
Prediction of Glycosylation Across the Human Proteome and the Correlation to Protein Function.
Proceedings of the 7th Pacific Symposium on Biocomputing, 2002
Recognition of Environmental and Genetic Effects on Barley Phenolic Fingerprints by Neural Networks.
Computers & Chemistry, 2001
Flexibility of the genetic code with respect to DNA structure.
Bidirectional Dynamics for Protein Secondary Structure Prediction.
Proceedings of the Sequence Learning - Paradigms, Algorithms, and Applications, 2001
Bioethics, Fiction Science, and the Future of Mankind - Session Introduction.
Proceedings of the 6th Pacific Symposium on Biocomputing, 2001
Proceedings of the Ninth International Conference on Intelligent Systems for Molecular Biology, 2001
Bioinformatics - the machine learning approach (2. ed.).
MIT Press, ISBN: 978-0-262-02506-5, 2001
Improving the Odds in Discriminating "Drug-like" from "Non Drug-like" Compounds.
Journal of Chemical Information and Computer Sciences, 2000
Assessing the accuracy of prediction algorithms for classification: an overview.
Matching Protein b-Sheet Partners by Feedforward and Recurrent Neural Networks.
Proceedings of the Eighth International Conference on Intelligent Systems for Molecular Biology, 2000
Protein β-Sheet Partner Prediction by Neural Networks.
Proceedings of the Artificial Neural Networks in Medicine and Biology, 2000
Bioinformatics - the machine learning approach.
MIT Press, ISBN: 978-0-262-02442-6, 2000
PhosphoBase, a database of phosphorylation sites: release 2.0.
Nucleic Acids Research, 1999
O-GLYCBASE version 4.0: a revised database of O-glycosylated proteins.
Nucleic Acids Research, 1999
The Biology of Eukaryotic Promoter Prediction - A Review.
Computers & Chemistry, 1999
MatrixPlot: visualizing sequence constraints.
Exploiting the past and the future in protein secondary structure prediction.
Structural basis for triplet repeat disorders: a computational analysis.
Using Sequence Motifs for Enhanced Neural Network Prediction of Protein Distance Constraints.
Proceedings of the Seventh International Conference on Intelligent Systems for Molecular Biology, 1999
O-GLYCBASE Version 3.0: a revised database of O-glycosylated proteins.
Nucleic Acids Research, 1998
PhosphoBase: a database of phosphorylation sites.
Nucleic Acids Research, 1998
Computational Applications of DNA Structural Scales.
Proceedings of the 6th International Conference on Intelligent Systems for Molecular Biology (ISMB-98), Montréal, Québec, Canada, June 28, 1998
O-GLYCBASE version 2.0: a revised database of O-glycosylated proteins.
Nucleic Acids Research, 1997
A Neural Network Method for Identification of Prokaryotic and Eukaryotic Signal Peptides and Prediction of their Cleavage Sites.
Int. J. Neural Syst., 1997
Displaying the information contents of structural RNA alignments: the structure logos.
Computer Applications in the Biosciences, 1997
O-GLYCBASE: a revised database of O-glycosylated proteins.
Nucleic Acids Research, 1996
Characterization of Prokaryotic and Eukaryotic Promoters Using Hidden Markov Models.
Proceedings of the Fourth International Conference on Intelligent Systems for Molecular Biology, 1996
Periodic Sequence Patterns in Human Exons.
Proceedings of the Third International Conference on Intelligent Systems for Molecular Biology, 1995
Hidden Markov Models for Human Genes.
Proceedings of the Advances in Neural Information Processing Systems 6, 1993
A Novel Approach to Prediction of the 3-Dimensional Structures.
Proceedings of the Advances in Neural Information Processing Systems 3, 1990
A Travelling Salesman Approach to Protein Conformation.
Complex Systems, 1989