Claus Lundegaard

According to our database, Claus Lundegaard authored at least 18 papers between 2003 and 2012.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2012

Reliable B Cell Epitope Predictions: Impacts of Method Development and Improved Benchmarking.

Jens Vindahl Kringelum, Claus Lundegaard, Ole Lund, Morten Nielsen

PLoS Comput. Biol., 2012

Immune epitope database analysis resource.

Yohan Kim, Julia V. Ponomarenko, Zhanyang Zhu, Dorjee Tamang, Peng Wang, Jason Greenbaum, Claus Lundegaard, Alessandro Sette, Ole Lund, Philip E. Bourne, Morten Nielsen, Bjoern Peters

Nucleic Acids Res., 2012

2010

CPHmodels-3.0 - remote homology modeling using structure-guided sequence profiles.

Morten Nielsen, Claus Lundegaard, Ole Lund, Thomas Nordahl Petersen

Nucleic Acids Res., 2010

PopCover: a method for selecting of peptides with optimal population and pathogen coverage.

Claus Lundegaard, M. Buggert, A. C. Karlsson, Ole Lund, Carina Perez, Morten Nielsen

Proceedings of the First ACM International Conference on Bioinformatics and Computational Biology, 2010

2009

Pan-specific MHC class I predictors: a benchmark of HLA class I pan-specific prediction methods.

Hao Zhang, Claus Lundegaard, Morten Nielsen

Bioinform., 2009

2008

Quantitative Predictions of Peptide Binding to Any HLA-DR Molecule of Known Sequence: NetMHCIIpan.

Morten Nielsen, Claus Lundegaard, Thomas Blicher, Bjoern Peters, Alessandro Sette, Sune Justesen, Søren Buus, Ole Lund

PLoS Comput. Biol., 2008

Immune epitope database analysis resource (IEDB-AR).

Qing Zhang, Peng Wang, Yohan Kim, Pernille Haste-Andersen, John E. Beaver, Philip E. Bourne, Huynh-Hoa Bui, Søren Buus, Sune Frankild, Jason Greenbaum, Ole Lund, Claus Lundegaard, Morten Nielsen, Julia V. Ponomarenko, Alessandro Sette, Zhanyang Zhu, Björn Peters

Nucleic Acids Res., 2008

NetMHC-3.0: accurate web accessible predictions of human, mouse and monkey MHC class I affinities for peptides of length 8-11.

Claus Lundegaard, Kasper Lamberth, Mikkel Harndahl, Søren Buus, Ole Lund, Morten Nielsen

Nucleic Acids Res., 2008

Accurate approximation method for prediction of class I MHC affinities for peptides of length 8, 10 and 11 using prediction tools trained on 9mers.

Claus Lundegaard, Ole Lund, Morten Nielsen

Bioinform., 2008

2007

Prediction of MHC class II binding affinity using SMM-align, a novel stabilization matrix alignment method.

Morten Nielsen, Claus Lundegaard, Ole Lund

BMC Bioinform., 2007

Large-scale validation of methods for cytotoxic T-lymphocyte epitope prediction.

Mette V. Larsen, Claus Lundegaard, Kasper Lamberth, Søren Buus, Ole Lund, Morten Nielsen

BMC Bioinform., 2007

Modeling the adaptive immune system: predictions and simulations.

Claus Lundegaard, Ole Lund, Can Kesmir, Søren Brunak, Morten Nielsen

Bioinform., 2007

2006

A Community Resource Benchmarking Predictions of Peptide Binding to MHC-I Molecules.

Bjoern Peters, Huynh-Hoa Bui, Sune Frankild, Morten Nielsen, Claus Lundegaard, Emrah Kostem, Derek Basch, Kasper Lamberth, Mikkel Harndahl, Ward Fleri, Stephen S. Wilson, John Sidney, Ole Lund, Søren Buus, Alessandro Sette

PLoS Comput. Biol., 2006

2005

Immunological bioinformatics.

Ole Lund, Morten Nielsen, Claus Lundegaard, Can Kesmir, Søren Brunak

Computational molecular biology, AAAI Press, ISBN: 978-0-262-12280-1, 2005

2004

Improved prediction of MHC class I and class II epitopes using a novel Gibbs sampling approach.

Morten Nielsen, Claus Lundegaard, Peder Worning, Christina Sylvester-Hvid, Kasper Lamberth, Søren Buus, Søren Brunak, Ole Lund

Bioinform., 2004

MHC Class I Epitope Binding Prediction Trained on Small Data Sets.

Claus Lundegaard, Morten Nielsen, Kasper Lamberth, Peder Worning, Christina Sylvester-Hvid, Søren Buus, Søren Brunak, Ole Lund

Proceedings of the Artificial Immune Systems, Third International Conference, 2004

2003

Selecting Informative Data for Developing Peptide-MHC Binding Predictors Using a Query by Committee Approach.

Jens Kaae Christensen, Kasper Lamberth, Morten Nielsen, Claus Lundegaard, Peder Worning, Sanne Lise Lauemøller, Søren Buus, Søren Brunak, Ole Lund

Neural Comput., 2003

Prediction of Protein Secondary Structure at High Accuracy Using a Combination of Many Neural Networks.

Claus Lundegaard, Thomas Nordahl Petersen, Morten Nielsen, Henrik Bohr, Jakob Bohr, Søren Brunak, Garry Gippert, Ole Lund

Proceedings of the Mathematical Methods for Protein Structure Analysis and Design, 2003