Alessandro Sette

According to our database1, Alessandro Sette authored at least 46 papers between 1989 and 2023.

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Bibliography

2023
PEPMatch: a tool to identify short peptide sequence matches in large sets of proteins.
BMC Bioinform., December, 2023

The Cancer Epitope Database and Analysis Resource (CEDAR).
Nucleic Acids Res., January, 2023

2022
Bioinformatic and Experimental Analysis of T Cell Immune Reactivity to SARS-CoV-2 and its Variants.
Frontiers Bioinform., 2022

A comprehensive analysis of the IEDB MHC class-I automated benchmark.
Briefings Bioinform., 2022

2021
An immunologically friendly classification of non-peptidic ligands.
Database J. Biol. Databases Curation, 2021

2020
Benchmarking predictions of MHC class I restricted T cell epitopes in a comprehensively studied model system.
PLoS Comput. Biol., 2020

A structured model for immune exposures.
Database J. Biol. Databases Curation, 2020

2019
The Immune Epitope Database (IEDB): 2018 update.
Nucleic Acids Res., 2019

IEDB-AR: immune epitope database - analysis resource in 2019.
Nucleic Acids Res., 2019

Benchmark datasets of immune receptor-epitope structural complexes.
BMC Bioinform., 2019

2018
The SysteMHC Atlas project.
Nucleic Acids Res., 2018

ImmunomeBrowser: a tool to aggregate and visualize complex and heterogeneous epitopes in reference proteins.
Bioinform., 2018

FAIR principles and the IEDB: short-term improvements and a long-term vision of OBO-foundry mediated machine-actionable interoperability.
Database J. Biol. Databases Curation, 2018

2017
Identifying specificity groups in the T cell receptor repertoire.
Nat., 2017

Better living through ontologies at the Immune Epitope Database.
Database J. Biol. Databases Curation, 2017

2016
An ontology for major histocompatibility restriction.
J. Biomed. Semant., 2016

2015
The immune epitope database (IEDB) 3.0.
Nucleic Acids Res., 2015

Automated benchmarking of peptide-MHC class I binding predictions.
Bioinform., 2015

2014
Dataset size and composition impact the reliability of performance benchmarks for peptide-MHC binding predictions.
BMC Bioinform., 2014

Development and validation of a broad scheme for prediction of HLA class II restricted T cell epitopes.
Proceedings of the 5th ACM Conference on Bioinformatics, 2014

The interplay of sequence conservation and T cell immune recognition.
Proceedings of the 5th ACM Conference on Bioinformatics, 2014

2013
Positional Bias of MHC Class I Restricted T-Cell Epitopes in Viral Antigens Is Likely due to a Bias in Conservation.
PLoS Comput. Biol., 2013

Properties of MHC Class I Presented Peptides That Enhance Immunogenicity.
PLoS Comput. Biol., 2013

Query enhancement through the practical application of ontology: the IEDB and OBI.
J. Biomed. Semant., 2013

A Taxonomy for Immunologists.
Proceedings of the 4th International Conference on Biomedical Ontology, 2013

2012
Immune epitope database analysis resource.
Nucleic Acids Res., 2012

2011
IEDB-3D: structural data within the immune epitope database.
Nucleic Acids Res., 2011

Cost sensitive hierarchical document classification to triage PubMed abstracts for manual curation.
BMC Bioinform., 2011

2010
The Immune Epitope Database 2.0.
Nucleic Acids Res., 2010

Peptide binding predictions for HLA DR, DP and DQ molecules.
BMC Bioinform., 2010

An automatic computational pipeline to display MHC binding motifs.
Proceedings of the First ACM International Conference on Bioinformatics and Computational Biology, 2010

2009
Derivation of an amino acid similarity matrix for peptide: MHC binding and its application as a Bayesian prior.
BMC Bioinform., 2009

2008
A Systematic Assessment of MHC Class II Peptide Binding Predictions and Evaluation of a Consensus Approach.
PLoS Comput. Biol., 2008

Quantitative Predictions of Peptide Binding to Any HLA-DR Molecule of Known Sequence: NetMHCIIpan.
PLoS Comput. Biol., 2008

Immune epitope database analysis resource (IEDB-AR).
Nucleic Acids Res., 2008

ElliPro: a new structure-based tool for the prediction of antibody epitopes.
BMC Bioinform., 2008

2007
Automating document classification for the Immune Epitope Database.
BMC Bioinform., 2007

Development of an epitope conservancy analysis tool to facilitate the design of epitope-based diagnostics and vaccines.
BMC Bioinform., 2007

2006
A Community Resource Benchmarking Predictions of Peptide Binding to MHC-I Molecules.
PLoS Comput. Biol., 2006

Curation of complex, context-dependent immunological data.
BMC Bioinform., 2006

Predicting population coverage of T-cell epitope-based diagnostics and vaccines.
BMC Bioinform., 2006

Improving MHC binding peptide prediction by incorporating binding data of auxiliary MHC molecules.
Bioinform., 2006

The Immune Epitope Database and Analysis Resource.
Proceedings of the Pattern Recognition in Bioinformatics, International Workshop, 2006

2005
Generating quantitative models describing the sequence specificity of biological processes with the stabilized matrix method.
BMC Bioinform., 2005

2003
Examining the independent binding assumption for binding of peptide epitopes to MHC-I molecules.
Bioinform., 2003

1989
A BASIC microcomputer program for data analysis of limiting dilution assays.
Comput. Appl. Biosci., 1989


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