Julia V. Ponomarenko

According to our database1, Julia V. Ponomarenko authored at least 27 papers between 1997 and 2017.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.



In proceedings 
PhD thesis 


On csauthors.net:


Scalable Design of Paired CRISPR Guide RNAs for Genomic Deletion.
PLoS Computational Biology, 2017

Ten Simple Rules on How to Organize a Scientific Retreat.
PLoS Computational Biology, 2017

The immune epitope database (IEDB) 3.0.
Nucleic Acids Res., 2015

Immune epitope database analysis resource.
Nucleic Acids Res., 2012

IEDB-3D: structural data within the immune epitope database.
Nucleic Acids Res., 2011

BiologicalNetworks - tools enabling the integration of multi-scale data for the host-pathogen studies.
BMC Syst. Biol., 2011

BiologicalNetworks 2.0 - an integrative view of genome biology data.
BMC Bioinform., 2010

Semantic integration of data on transcriptional regulation.
Bioinform., 2010

Immune epitope database analysis resource (IEDB-AR).
Nucleic Acids Res., 2008

ElliPro: a new structure-based tool for the prediction of antibody epitopes.
BMC Bioinform., 2008

Curation of complex, context-dependent immunological data.
BMC Bioinform., 2006

The Immune Epitope Database and Analysis Resource.
Proceedings of the Pattern Recognition in Bioinformatics, International Workshop, 2006

Mining Genome Variation to Associate Genetic Disease with Mutation Alterations and Ortho/Paralogous Polimorphysms in Transcription Factor Binding Site.
Int. J. Artif. Intell. Tools, 2005

rSNP_Guide, a database system for analysis of transcription factor binding to DNA with variations: application to genome annotation.
Nucleic Acids Res., 2003

SELEX_DB: a database on in vitro selected oligomers adapted for recognizing natural sites and for analyzing both SNPs and site-directed mutagenesis data.
Nucleic Acids Res., 2002

Mining DNA sequences to predict sites which mutations cause genetic diseases.
Knowl. Based Syst., 2002

Building an automated classification of DNA-binding protein domains.
Proceedings of the European Conference on Computational Biology (ECCB 2002), 2002

rSNP_Guide, a database system for analysis of transcription factor binding to target sequences: application to SNPs and site-directed mutations.
Nucleic Acids Res., 2001

ACTIVITY: a database on DNA/RNA sites activity adapted to apply sequence-activity relationships from one system to another.
Nucleic Acids Res., 2001

Mining SNPs for Associating Disease Penetration with Transcription Factor Binding Site Alterations.
Proceedings of the Computer science and biology: Proceedings of the German Conference on Bioinformatics, 2001

Mining Genome Variation to Associate Disease with Transcription Factor Binding Site Alteration.
Proceedings of the 2nd IEEE International Symposium on Bioinformatics and Bioengineering, 2001

SELEX_DB: an activated database on selected randomized DNA/RNA sequences addressed to genomic sequence annotation.
Nucleic Acids Res., 2000

Conformational and physicochemical DNA features specific for transcription factor binding sites.
Bioinform., 1999

Oligonucleotide frequency matrices addressed to recognizing functional DNA sites.
Bioinform., 1999

Identification of sequence-dependent DNA features correlating to activity of DNA sites interacting with proteins.
Bioinform., 1999

Nucleosomal DNA property database.
Bioinform., 1999

Identification of the significant conformational features of functional sites in B-DNA.
Proceedings of the German Conference on Bioinformatics, 1997