Cristian Coarfa

According to our database, Cristian Coarfa authored at least 17 papers between 2000 and 2015.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2015

Integrative analysis of 111 reference human epigenomes Open.

Roadmap Epigenomics Consortium, Anshul Kundaje, Wouter Meuleman, Jason Ernst, Misha Bilenky, Angela Yen, Alireza Heravi Moussavi, Pouya Kheradpour, ZhiZhuo Zhang, Jianrong Wang, Michael J. Ziller, Viren Amin, John W. Whitaker, Matthew D. Schultz, Lucas D. Ward, Abhishek Sarkar, Gerald T. Quon, Richard S. Sandstrom, Matthew L. Eaton, Yi-Chieh Wu, Andreas R. Pfenning, Xinchen Wang, Melina Claussnitzer, Yaping Liu, Cristian Coarfa, R. Alan Harris, Noam Shoresh, Charles B. Epstein, Elizabeta Gjoneska, Danny Leung, Wei Xie, R. David Hawkins, Ryan Lister, Chibo Hong, Philippe Gascard, Andrew J. Mungall, Richard A. Moore, Eric Chuah, Angela Tam, Theresa K. Canfield, R. Scott Hansen, Rajinder Kaul, Peter J. Sabo, Mukul S. Bansal, Annaick Carles, Jesse R. Dixon, Kyle Kai-How Farh, Soheil Feizi, Rosa Karlic, Ah-Ram Kim, Ashwinikumar Kulkarni, Daofeng Li, Rebecca F. Lowdon, GiNell Elliott, Tim R. Mercer, Shane J. Neph, Vitor Onuchic, Paz Polak, Nisha Rajagopal, Pradipta Ray, Richard C. Sallari, Kyle T. Siebenthall, Nicholas A. Sinnott-Armstrong, Michael Stevens, Robert E. Thurman, Jie Wu, Bo Zhang, Xin Zhou, Arthur E. Beaudet, Laurie A. Boyer, Philip L. De Jager, Peggy J. Farnham, Susan J. Fisher, David Haussler, Steven J. M. Jones, Wei Li, Marco A. Marra, Michael T. McManus, Shamil R. Sunyaev, James A. Thomson, Thea D. Tlsty, Li-Huei Tsai, Wei Wang, Robert A. Waterland, Michael Q. Zhang, Lisa H. Chadwick, Bradley E. Bernstein, Joseph F. Costello, Joseph R. Ecker, Martin Hirst, Alexander Meissner, Aleksandar Milosavljevic, Bing Ren, John A. Stamatoyannopoulos, Ting Wang, Manolis Kellis

Nat., 2015

2014

Analysis of interactions between the epigenome and structural mutability of the genome using Genboree workbench tools.

Cristian Coarfa, Christina Pichot, Andrew R. Jackson, Arpit Tandon, Viren Amin, Sriram Raghuraman, Sameer Paithankar, Adrian V. Lee, Sean E. McGuire, Aleksandar Milosavljevic

BMC Bioinform., 2014

2012

The Genboree Microbiome Toolset and the analysis of 16S rRNA microbial sequences.

Kevin Riehle, Cristian Coarfa, Andrew R. Jackson, Jun Ma, Arpit Tandon, Sameer Paithankar, Sriram Raghuraman, Toni-Ann Mistretta, Delphine Saulnier, Sabeen Raza, Maria Diaz, Robert Shulman, Kjersti Aagaard, James Versalovic, Aleksandar Milosavljevic

BMC Bioinform., 2012

An integrative variant analysis suite for whole exome next-generation sequencing data.

Danny Challis, Jin Yu, Uday S. Evani, Andrew R. Jackson, Sameer Paithankar, Cristian Coarfa, Aleksandar Milosavljevic, Richard A. Gibbs, Fuli Yu

BMC Bioinform., 2012

2011

Enabling Atlas2 personal genome analysis on the cloud.

Uday S. Evani, Danny Challis, Jin Yu, Andrew R. Jackson, Sameer Paithankar, Matthew N. Bainbridge, Cristian Coarfa, Aleksandar Milosavljevic, Fuli Yu

Proceedings of the 2011 IEEE International Workshop on Genomic Signal Processing and Statistics, 2011

2010

Pash 3.0: A versatile software package for read mapping and integrative analysis of genomic and epigenomic variation using massively parallel DNA sequencing.

Cristian Coarfa, Fuli Yu, Christopher A. Miller, Zuozhou Chen, R. Alan Harris, Aleksandar Milosavljevic

BMC Bioinform., 2010

2008

Pash 2.0: Scaleable Sequence Anchoring for Next-Generation Sequencing Technologgies.

Cristian Coarfa, Aleksandar Milosavljevic

Proceedings of the Biocomputing 2008, 2008

2007

Scalability analysis of SPMD codes using expectations.

Cristian Coarfa, John M. Mellor-Crummey, Nathan Froyd, Yuri Dotsenko

Proceedings of the 21th Annual International Conference on Supercomputing, 2007

2006

Experiences with Sweep3D implementations in Co-array Fortran.

Cristian Coarfa, Yuri Dotsenko, John M. Mellor-Crummey

J. Supercomput., 2006

2005

An evaluation of global address space languages: co-array fortran and unified parallel C.

Cristian Coarfa, Yuri Dotsenko, John M. Mellor-Crummey, François Cantonnet, Tarek A. El-Ghazawi, Ashrujit Mohanti, Yiyi Yao, Daniel G. Chavarría-Miranda

Proceedings of the ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming, 2005

PRec-I-DCM3: A Parallel Framework for Fast and Accurate Large Scale Phylogeny Reconstruction.

Cristian Coarfa, Yuri Dotsenko, John M. Mellor-Crummey, Luay Nakhleh, Usman Roshan

Proceedings of the 11th International Conference on Parallel and Distributed Systems, 2005

2004

Experiences with Co-array Fortran on Hardware Shared Memory Platforms.

Yuri Dotsenko, Cristian Coarfa, John M. Mellor-Crummey, Daniel G. Chavarría-Miranda

Proceedings of the Languages and Compilers for High Performance Computing, 2004

A Multi-Platform Co-Array Fortran Compiler.

Yuri Dotsenko, Cristian Coarfa, John M. Mellor-Crummey

Proceedings of the 13th International Conference on Parallel Architectures and Compilation Techniques (PACT 2004), 29 September, 2004

2003

An emerging co-array fortran compiler.

Cristian Coarfa, Yuri Dotsenko

Proceedings of the ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming, 2003

Co-array Fortran Performance and Potential: An NPB Experimental Study.

Cristian Coarfa, Yuri Dotsenko, Jason Eckhardt, John M. Mellor-Crummey

Proceedings of the Languages and Compilers for Parallel Computing, 2003

2002

Performance Analysis of TLS Web Servers.

Cristian Coarfa, Peter Druschel, Dan S. Wallach

Proceedings of the Network and Distributed System Security Symposium, 2002

2000

Random 3-SAT: The Plot Thickens.

Cristian Coarfa, Demetrios D. Demopoulos, Alfonso San Miguel Aguirre, Devika Subramanian, Moshe Y. Vardi

Proceedings of the Principles and Practice of Constraint Programming, 2000