Ting Wang

According to our database, Ting Wang authored at least 16 papers between 2008 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2024

Pycallingcards: an integrated environment for visualizing, analyzing, and interpreting Calling Cards data.

Juanru Guo, Wenjin Zhang, Xuhua Chen, Allen Yen, Lucy Chen, Christian A. Shively, Daofeng Li, Ting Wang, Joseph D. Dougherty, Robi D. Mitra

Bioinform., February, 2024

BAllC and BAllCools: efficient formatting and operating for single-cell DNA methylation data.

Wei Tian, Wubin Ding, Jiawei Shen, Daofeng Li, Ting Wang, Joseph R. Ecker

Bioinform., 2024

2023

Example modbed files can be used for visualization on the WashU Epigenome Browser.

Daofeng Li, Ting Wang

Dataset, October, 2023

Non-Small Cell Lung Cancer Epigenomes Exhibit Altered DNA Methylation in Smokers and Never-Smokers.

Jennifer A. Karlow, Erica C. Pehrsson, Xiaoyun Xing, Mark Watson, Siddhartha Devarakonda, Ramaswamy Govindan, Ting Wang

Genom. Proteom. Bioinform., 2023

2022

WashU Epigenome Browser update 2022.

Daofeng Li, Deepak Purushotham, Jessica K. Harrison, Silas Hsu, Xiaoyu Zhuo, Changxu Fan, Shane Liu, Vincent Xu, Samuel Chen, Jason Xu, Shinyi Ouyang, Angela S. Wu, Ting Wang

Nucleic Acids Res., 2022

2021

AIAP: A Quality Control and Integrative Analysis Package to Improve ATAC-seq Data Analysis.

Shaopeng Liu, Daofeng Li, Cheng Lyu, Paul M. Gontarz, Benpeng Miao, Pamela A. F. Madden, Ting Wang, Bo Zhang

Genom. Proteom. Bioinform., 2021

The qBED track: a novel genome browser visualization for point processes.

Arnav Moudgil, Daofeng Li, Silas Hsu, Deepak Purushotham, Ting Wang, Robi D. Mitra

Bioinform., 2021

2020

Robust principal component analysis for accurate outlier sample detection in RNA-Seq data.

Xiaoying Chen, Bo Zhang, Ting Wang, Azad Bonni, Guoyan Zhao

BMC Bioinform., 2020

2019

WashU Epigenome Browser update 2019.

Daofeng Li, Silas Hsu, Deepak Purushotham, Renee L. Sears, Ting Wang

Nucleic Acids Res., 2019

2015

Integrative analysis of 111 reference human epigenomes Open.

Roadmap Epigenomics Consortium, Anshul Kundaje, Wouter Meuleman, Jason Ernst, Misha Bilenky, Angela Yen, Alireza Heravi Moussavi, Pouya Kheradpour, ZhiZhuo Zhang, Jianrong Wang, Michael J. Ziller, Viren Amin, John W. Whitaker, Matthew D. Schultz, Lucas D. Ward, Abhishek Sarkar, Gerald T. Quon, Richard S. Sandstrom, Matthew L. Eaton, Yi-Chieh Wu, Andreas R. Pfenning, Xinchen Wang, Melina Claussnitzer, Yaping Liu, Cristian Coarfa, R. Alan Harris, Noam Shoresh, Charles B. Epstein, Elizabeta Gjoneska, Danny Leung, Wei Xie, R. David Hawkins, Ryan Lister, Chibo Hong, Philippe Gascard, Andrew J. Mungall, Richard A. Moore, Eric Chuah, Angela Tam, Theresa K. Canfield, R. Scott Hansen, Rajinder Kaul, Peter J. Sabo, Mukul S. Bansal, Annaick Carles, Jesse R. Dixon, Kyle Kai-How Farh, Soheil Feizi, Rosa Karlic, Ah-Ram Kim, Ashwinikumar Kulkarni, Daofeng Li, Rebecca F. Lowdon, GiNell Elliott, Tim R. Mercer, Shane J. Neph, Vitor Onuchic, Paz Polak, Nisha Rajagopal, Pradipta Ray, Richard C. Sallari, Kyle T. Siebenthall, Nicholas A. Sinnott-Armstrong, Michael Stevens, Robert E. Thurman, Jie Wu, Bo Zhang, Xin Zhou, Arthur E. Beaudet, Laurie A. Boyer, Philip L. De Jager, Peggy J. Farnham, Susan J. Fisher, David Haussler, Steven J. M. Jones, Wei Li, Marco A. Marra, Michael T. McManus, Shamil R. Sunyaev, James A. Thomson, Thea D. Tlsty, Li-Huei Tsai, Wei Wang, Robert A. Waterland, Michael Q. Zhang, Lisa H. Chadwick, Bradley E. Bernstein, Joseph F. Costello, Joseph R. Ecker, Martin Hirst, Alexander Meissner, Aleksandar Milosavljevic, Bing Ren, John A. Stamatoyannopoulos, Ting Wang, Manolis Kellis

Nat., 2015

2014

methylC Track: visual integration of single-base resolution DNA methylation data on the WashU EpiGenome Browser.

Xin Zhou, Daofeng Li, Rebecca F. Lowdon, Joseph F. Costello, Ting Wang

Bioinform., 2014

Track data hubs enable visualization of user-defined genome-wide annotations on the UCSC Genome Browser.

Brian J. Raney, Timothy R. Dreszer, Galt P. Barber, Hiram Clawson, Pauline A. Fujita, Ting Wang, Ngan Nguyen, Benedict Paten, Ann S. Zweig, Donna Karolchik, W. James Kent

Bioinform., 2014

2013

MethylCRF, an Algorithm for Estimating Absolute Methylation Levels at Single CpG Resolution from Methylation Enrichment and Restriction Enzyme Sequencing Methods.

Michael Stevens, Jeffrey B. Cheng, Mingchao Xie, Joseph F. Costello, Ting Wang

Proceedings of the Research in Computational Molecular Biology, 2013

2010

ENCODE whole-genome data in the UCSC Genome Browser.

Kate R. Rosenbloom, Timothy R. Dreszer, Michael Pheasant, Galt P. Barber, Laurence R. Meyer, Andy Pohl, Brian J. Raney, Ting Wang, Angie S. Hinrichs, Ann S. Zweig, Pauline A. Fujita, Katrina Learned, Brooke L. Rhead, Kayla E. Smith, Robert M. Kuhn, Donna Karolchik, David Haussler, W. James Kent

Nucleic Acids Res., 2010

2009

The UCSC Genome Browser Database: update 2009.

Robert M. Kuhn, Donna Karolchik, Ann S. Zweig, Ting Wang, Kayla E. Smith, Kate R. Rosenbloom, Brooke L. Rhead, Brian J. Raney, Andy Pohl, Michael Pheasant, Laurence R. Meyer, Fan Hsu, Angela S. Hinrichs, Rachel A. Harte, Belinda Giardine, Pauline A. Fujita, Mark Diekhans, Timothy R. Dreszer, Hiram Clawson, Galt P. Barber, David Haussler, W. James Kent

Nucleic Acids Res., 2009

2008

The UCSC Genome Browser Database: 2008 update.

Donna Karolchik, Robert M. Kuhn, Robert Baertsch, Galt P. Barber, Hiram Clawson, Mark Diekhans, Belinda Giardine, Rachel A. Harte, Angela S. Hinrichs, Fan Hsu, Kord M. Kober, Webb Miller, Jakob Skou Pedersen, Andy Pohl, Brian J. Raney, Brooke L. Rhead, Kate R. Rosenbloom, Kayla E. Smith, Mario Stanke, Archana Thakkapallayil, Heather Trumbower, Ting Wang, Ann S. Zweig, David Haussler, W. James Kent

Nucleic Acids Res., 2008