Damien Eveillard

According to our database, Damien Eveillard authored at least 17 papers between 2003 and 2025.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2025

HUMESS: integrating quantitative transcriptomic analysis and metabolic modeling to unveil condition-specific gene signatures.

Louis Paré, Philippe Bordron, Laurent David, Maxime Mahé, Audrey Bihouée, Damien Eveillard

Bioinform., 2025

2020

From Systems Biology to Systems Ecology: A Computational Journey Through Biological Scales. (De la biologie systémique à l'écologie systémique : un voyage informatique à travers les échelles biologiques).

Damien Eveillard

, 2020

2017

Meneco, a Topology-Based Gap-Filling Tool Applicable to Degraded Genome-Wide Metabolic Networks.

Sylvain Prigent, Clémence Frioux, Simon M. Dittami, Sven Thiele, Abdelhalim Larhlimi, Guillaume Collet, Fabien Gutknecht, Jeanne Got, Damien Eveillard, Jérémie Bourdon, Frédéric Plewniak, Thierry Tonon, Anne Siegel

PLoS Comput. Biol., 2017

2016

Deciphering transcriptional regulations coordinating the response to environmental changes.

Vicente Acuña, Andrés Aravena, Carito Guziolowski, Damien Eveillard, Anne Siegel, Alejandro Maass

BMC Bioinform., 2016

2015

OPINION PAPER Evolutionary Constraint-Based Formulation Requires New Bi-level Solving Techniques.

Marko Budinich, Jérémie Bourdon, Abdelhalim Larhlimi, Damien Eveillard

Proceedings of the Computational Methods in Systems Biology, 2015

2013

Extending the Metabolic Network of <i>Ectocarpus Siliculosus</i> Using Answer Set Programming.

Guillaume Collet, Damien Eveillard, Martin Gebser, Sylvain Prigent, Torsten Schaub, Anne Siegel, Sven Thiele

Proceedings of the Logic Programming and Nonmonotonic Reasoning, 2013

An ASP Application in Integrative Biology: Identification of Functional Gene Units.

Philippe Bordron, Damien Eveillard, Alejandro Maass, Anne Siegel, Sven Thiele

Proceedings of the Logic Programming and Nonmonotonic Reasoning, 2013

2011

Integrating Quantitative Knowledge into a Qualitative Gene Regulatory Network.

Jérémie Bourdon, Damien Eveillard, Anne Siegel

PLoS Comput. Biol., 2011

SIPPER: A flexible method to integrate heterogeneous data into a metabolic network.

Philippe Bordron, Damien Eveillard, Irena Rusu

Proceedings of the IEEE 1st International Conference on Computational Advances in Bio and Medical Sciences, 2011

2010

Hybrid modeling of biological networks: mixing temporal and qualitative biological properties.

Jonathan Fromentin, Damien Eveillard, Olivier F. Roux

BMC Syst. Biol., 2010

Including Ordinary Differential Equations Based Constraints in the Standard CP Framework.

Alexandre Goldsztejn, Olivier Mullier, Damien Eveillard, Hiroshi Hosobe

Proceedings of the Principles and Practice of Constraint Programming - CP 2010, 2010

2009

Temporal constraints of a gene regulatory network: Refining a qualitative simulation.

Jamil Ahmad, Jérémie Bourdon, Damien Eveillard, Jonathan Fromentin, Olivier F. Roux, Christine Sinoquet

Biosyst., 2009

Homogeneous decomposition of protein interaction networks: refining the description of intra-modular interactions.

Géraldine Del Mondo, Damien Eveillard, Irena Rusu

Bioinform., 2009

Comparing Bacterial Genomes by Searching Their Common Intervals.

Sébastien Angibaud, Damien Eveillard, Guillaume Fertin, Irena Rusu

Proceedings of the Bioinformatics and Computational Biology, 2009

2004

A multi-scale constraint programming model of alternative splicing regulation.

Damien Eveillard, Delphine Ropers, Hidde de Jong, Christiane Branlant, Alexander Bockmayr

Theor. Comput. Sci., 2004

Building and Analysing an Integrative Model of HIV-1 RNA Alternative Splicing.

Alexander Bockmayr, Arnaud Courtois, Damien Eveillard, M. Vezain

Proceedings of the Computational Methods in Systems Biology, International Conference, 2004

2003

Multiscale Modeling of Alternative Splicing Regulation.

Damien Eveillard, Delphine Ropers, Hidde de Jong, Christiane Branlant, Alexander Bockmayr

Proceedings of the Computational Methods in Systems Biology, First International Workshop, 2003