Jérémie Bourdon

According to our database, Jérémie Bourdon authored at least 27 papers between 2001 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2023

Predicting weighted unobserved nodes in a regulatory network using answer set programming.

Sophie Le Bars, Mathieu Bolteau, Jérémie Bourdon, Carito Guziolowski

BMC Bioinform., December, 2023

Inferring Boolean Networks from Single-Cell Human Embryo Datasets.

Mathieu Bolteau, Jérémie Bourdon, Laurent David, Carito Guziolowski

Proceedings of the Bioinformatics Research and Applications - 19th International Symposium, 2023

2021

Large-scale regulatory and signaling network assembly through linked open data.

Marie Lefebvre, Alban Gaignard, Maxime Folschette, Jérémie Bourdon, Carito Guziolowski

Database J. Biol. Databases Curation, 2021

2020

Bayesian Integrative Modeling of Genome-Scale Metabolic and Regulatory Networks.

Hanen Mhamdi, Jérémie Bourdon, Abdelhalim Larhlimi, Mourad Elloumi

Informatics, 2020

Comparing Probabilistic and Logic Programming Approaches to Predict the Effects of Enzymes in a Neurodegenerative Disease Model.

Sophie Le Bars, Jérémie Bourdon, Carito Guziolowski

Proceedings of the Computational Methods in Systems Biology, 2020

2019

Logic and Linear Programs to Understand Cancer Response.

Misbah Razzaq, Lokmane Chebouba, Pierre Le Jeune, Hanen Mhamdi, Carito Guziolowski, Jérémie Bourdon

Proceedings of the Automated Reasoning for Systems Biology and Medicine, 2019

OpenComp3d: An open-source framework dedicated to design in power electronics.

A. Morentin, G. Fontes, M. Mannes-Hillesheim, Thierry Meynard, Didier Flumian, Jérémie Bourdon, Hubert Piquet

Math. Comput. Simul., 2019

2018

Computational discovery of dynamic cell line specific Boolean networks from multiplex time-course data.

Misbah Razzaq, Loïc Paulevé, Anne Siegel, Julio Saez-Rodriguez, Jérémie Bourdon, Carito Guziolowski

PLoS Comput. Biol., 2018

Computing Diverse Boolean Networks from Phosphoproteomic Time Series Data.

Misbah Razzaq, Roland Kaminski, Javier Romero, Torsten Schaub, Jérémie Bourdon, Carito Guziolowski

Proceedings of the Computational Methods in Systems Biology, 2018

2017

Meneco, a Topology-Based Gap-Filling Tool Applicable to Degraded Genome-Wide Metabolic Networks.

Sylvain Prigent, Clémence Frioux, Simon M. Dittami, Sven Thiele, Abdelhalim Larhlimi, Guillaume Collet, Fabien Gutknecht, Jeanne Got, Damien Eveillard, Jérémie Bourdon, Frédéric Plewniak, Thierry Tonon, Anne Siegel

PLoS Comput. Biol., 2017

A Logic for Checking the Probabilistic Steady-State Properties of Reaction Networks.

Vincent Picard, Anne Siegel, Jérémie Bourdon

J. Comput. Biol., 2017

2016

Computational Methods in Systems Biology.

Jérémie Bourdon, Olivier F. Roux

Biosyst., 2016

2015

OPINION PAPER Evolutionary Constraint-Based Formulation Requires New Bi-level Solving Techniques.

Marko Budinich, Jérémie Bourdon, Abdelhalim Larhlimi, Damien Eveillard

Proceedings of the Computational Methods in Systems Biology, 2015

2014

Large deviation properties for patterns.

Jérémie Bourdon, Mireille Régnier

J. Discrete Algorithms, 2014

Multivariate Normal Approximation for the Stochastic Simulation Algorithm: Limit Theorem and Applications.

Vincent Picard, Anne Siegel, Jérémie Bourdon

Proceedings of the 5th International Workshop on Static Analysis and Systems Biology, 2014

A combinatorial approach to products of Pisot substitutions.

Valérie Berthé, Jérémie Bourdon, Timo Jolivet, Anne Siegel

CoRR, 2014

Exploring metabolism flexibility in complex organisms through quantitative study of precursor sets for system outputs.

Oumarou Abdou-Arbi, Sophie Lemosquet, Jaap Van Milgen, Anne Siegel, Jérémie Bourdon

BMC Syst. Biol., 2014

2013

Generating Discrete Planes with Substitutions.

Valérie Berthé, Jérémie Bourdon, Timo Jolivet, Anne Siegel

Proceedings of the Combinatorics on Words - 9th International Conference, 2013

2012

Sources Probabilistes: des séquences aux systèmes. (Probabilistic sources: from sequences to systems).

Jérémie Bourdon

, 2012

2011

Integrating Quantitative Knowledge into a Qualitative Gene Regulatory Network.

Jérémie Bourdon, Damien Eveillard, Anne Siegel

PLoS Comput. Biol., 2011

Statistical properties of factor oracles.

Jérémie Bourdon, Irena Rusu

J. Discrete Algorithms, 2011

2010

A Parallel Scheme for Comparing transcription Factor Binding Sites Matrices.

Solenne Carat, Rémi Houlgatte, Jérémie Bourdon

J. Bioinform. Comput. Biol., 2010

2009

Temporal constraints of a gene regulatory network: Refining a qualitative simulation.

Jamil Ahmad, Jérémie Bourdon, Damien Eveillard, Jonathan Fromentin, Olivier F. Roux, Christine Sinoquet

Biosyst., 2009

2006

Pattern Matching Statistics on Correlated Sources.

Jérémie Bourdon, Brigitte Vallée

Proceedings of the LATIN 2006: Theoretical Informatics, 2006

2002

Dynamical analysis of alpha-Euclidean algorithms.

Jérémie Bourdon, Benoit Daireaux, Brigitte Vallée

J. Algorithms, 2002

2001

Size and path length of Patricia tries: Dynamical sources context.

Jérémie Bourdon

Random Struct. Algorithms, 2001

On the Stack-Size of General Tries.

Jérémie Bourdon, Markus E. Nebel, Brigitte Vallée

RAIRO Theor. Informatics Appl., 2001