Julie A. Dickerson

Orcid: 0000-0003-4973-5641

According to our database1, Julie A. Dickerson authored at least 45 papers between 1993 and 2017.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

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Links

On csauthors.net:

Bibliography

2017
Strawberry: Fast and accurate genome-guided transcript reconstruction and quantification from RNA-Seq.
PLoS Comput. Biol., 2017

Differential alternative splicing patterns with differential expression to computationally extract plant molecular pathways.
Proceedings of the 2017 IEEE International Conference on Bioinformatics and Biomedicine, 2017

2016
The quality of metabolic pathway resources depends on initial enzymatic function assignments: a case for maize.
BMC Syst. Biol., 2016

2014
Fuzzy Navigation Engine: Mitigating the Cognitive Demands of Semi-Natural Locomotion.
Presence Teleoperators Virtual Environ., 2014

A novel class dependent feature selection method for cancer biomarker discovery.
Comput. Biol. Medicine, 2014

A computational platform to maintain and migrate manual functional annotations for BioCyc databases.
BMC Syst. Biol., 2014

Comparisons of computational methods for differential alternative splicing detection using RNA-seq in plant systems.
BMC Bioinform., 2014

2013
Semi-automated Constraint-based Metabolic Model Generation.
Proceedings of the ACM Conference on Bioinformatics, 2013

Incorporating Gene Annotations as Node Metadata to Improve Network Centrality Measures for Better Node Ranking.
Proceedings of the ACM Conference on Bioinformatics, 2013

Computational methods for alternative splicing detection using RNA-seq.
Proceedings of the ACM Conference on Bioinformatics, 2013

2012
PLEXdb: gene expression resources for plants and plant pathogens.
Nucleic Acids Res., 2012

Plantmetabolomics.org: mass spectrometry-based <i>Arabidopsis</i> metabolomics - database and tools update.
Nucleic Acids Res., 2012

StruLocPred: structure-based protein subcellular localisation prediction using multi-class support vector machine.
Int. J. Data Min. Bioinform., 2012

Network motif comparison rationalizes Sec1/Munc18-SNARE regulation mechanism in exocytosis.
BMC Syst. Biol., 2012

Discriminating response groups in metabolic and regulatory pathway networks.
Bioinform., 2012

2011
Monte Carlo randomization tests for large-scale abundance datasets on the GPU.
Comput. Methods Programs Biomed., 2011

Reconstructing genome-wide regulatory network of E. coli using transcriptome data and predicted transcription factor activities.
BMC Bioinform., 2011

CytoModeler: a tool for bridging large-scale network analysis and dynamic quantitative modeling.
Bioinform., 2011

2010
MetNetGE: interactive views of biological networks and ontologies.
BMC Bioinform., 2010

OmicsAnalyzer: a Cytoscape plug-in suite for modeling omics data.
Bioinform., 2010

PathwayAccess: CellDesigner plugins for pathway databases.
Bioinform., 2010

Biological pathway data integration trends, techniques, issues and challenges: A survey.
Proceedings of the Second World Congress on Nature & Biologically Inspired Computing, 2010

Visualizing Multivariate Hierarchic Data Using Enhanced Radial Space-Filling Layout.
Proceedings of the Advances in Visual Computing - 6th International Symposium, 2010

Gene Regulatory Network Reconstruction Based on Gene Expression and Transcription Factor Activities.
Proceedings of the International Conference on Bioinformatics & Computational Biology, 2010

2009
<i>Arabidopsis </i>gene co-expression network and its functional modules.
BMC Bioinform., 2009

Visualization of Gene Regulatory Networks.
Proceedings of the Advances in Visual Computing, 5th International Symposium, 2009

Reaction Centric Layout for Metabolic Networks.
Proceedings of the Advances in Visual Computing, 5th International Symposium, 2009

2008
OmicsViz: Cytoscape plug-in for visualizing omics data across species.
Bioinform., 2008

2007
Web Site Recommendation Using HTTP Traffic.
Proceedings of the 7th IEEE International Conference on Data Mining (ICDM 2007), 2007

Modeling protein interaction network and mechanisms in exocytosis.
Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, 2007

2006
Hierarchical visualization of metabolic networks using virtual reality.
Proceedings of the Proceedings VRCIA 2006 ACM International Conference on Virtual Reality Continuum and its Applications, 2006

A testbed for evaluation and analysis of stepping stone attack attribution techniques.
Proceedings of the 2nd International Conference on Testbeds & Research Infrastructures for the DEvelopment of NeTworks & COMmunities (TRIDENTCOM 2006), 2006

2005
Modeling gene expression networks using fuzzy logic.
IEEE Trans. Syst. Man Cybern. Part B, 2005

BarleyBase - an expression profiling database for plant genomics.
Nucleic Acids Res., 2005

Integration of metabolic networks and gene expression in virtual reality.
Bioinform., 2005

BarleyExpress: a web-based submission tool for enriched microarray database annotations.
Bioinform., 2005

Using the biological taxonomy to access biological literature with PathBinderH.
Bioinform., 2005

2004
Developing an Integrated Wireless System for Fully Immersive Virtual Reality Environments.
Proceedings of the 8th International Symposium on Wearable Computers (ISWC 2004), 31 October, 2004

2003
Fuzzy feature extraction and visualization for intrusion detection.
Proceedings of the 12th IEEE International Conference on Fuzzy Systems, 2003

Creating Metabolic Network Models using Text Mining and Expert Knowledge.
Proceedings of the Computational Biology and Genome Informatics, 2003

1999
A comparison of radial basis function networks and fuzzy neural logic networks for autonomous star recognition.
Proceedings of the International Joint Conference Neural Networks, 1999

1996
Fuzzy function approximation with ellipsoidal rules.
IEEE Trans. Syst. Man Cybern. Part B, 1996

Fuzzy throttle and brake control for platoons of smart cars.
Fuzzy Sets Syst., 1996

1994
Virtual Worlds as Fuzzy Cognitive Maps.
Presence Teleoperators Virtual Environ., 1994

1993
Fuzzy function learning with covariance ellipsoids.
Proceedings of International Conference on Neural Networks (ICNN'88), San Francisco, CA, USA, March 28, 1993


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