Ivan Merelli

According to our database1, Ivan Merelli authored at least 91 papers between 2005 and 2020.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

Legend:

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Online presence:

On csauthors.net:

Bibliography

2020
Integrating Petri Nets and Flux Balance Methods in Computational Biology Models: a Methodological and Computational Practice.
Fundam. Informaticae, 2020

A secure cloud-edges computing architecture for metagenomics analysis.
Future Gener. Comput. Syst., 2020

StreamFlow: cross-breeding cloud with HPC.
CoRR, 2020

On low-power SoCs as storage bricks for Bioinformatics.
Concurr. Comput. Pract. Exp., 2020

Latest advances in parallel, distributed, and network-based processing.
Concurr. Comput. Pract. Exp., 2020

γ-TRIS: a graph-algorithm for comprehensive identification of vector genomic insertion sites.
Bioinform., 2020

2019
Infrastructure for High-Performance Computing: Grids and Grid Computing.
Proceedings of the Encyclopedia of Bioinformatics and Computational Biology - Volume 1, 2019

Parallel Architectures for Bioinformatics.
Proceedings of the Encyclopedia of Bioinformatics and Computational Biology - Volume 1, 2019

Exploiting Docker containers over Grid computing for a comprehensive study of chromatin conformation in different cell types.
J. Parallel Distributed Comput., 2019

SoC-based computing infrastructures for scientific applications and commercial services: Performance and economic evaluations.
Future Gener. Comput. Syst., 2019

Combining Edge and Cloud computing for low-power, cost-effective metagenomics analysis.
Future Gener. Comput. Syst., 2019

GenHap: a novel computational method based on genetic algorithms for haplotype assembly.
BMC Bioinform., 2019

Parallel Computing in Deep Learning: Bioinformatics Case Studiesa.
Proceedings of the 27th Euromicro International Conference on Parallel, 2019

Comparing Deep and Machine Learning Approaches in Bioinformatics: A miRNA-Target Prediction Case Study.
Proceedings of the Computational Science - ICCS 2019, 2019

NeoHiC: A Web Application for the Analysis of Hi-C Data.
Proceedings of the Computational Intelligence Methods for Bioinformatics and Biostatistics, 2019

2018
Improving eQTL Analysis Using a Machine Learning Approach for Data Integration: A Logistic Model Tree Solution.
J. Comput. Biol., 2018

Low-power portable devices for metagenomics analysis: Fog computing makes bioinformatics ready for the Internet of Things.
Future Gener. Comput. Syst., 2018

A Scalable Genetic Programming Approach to Integrate miRNA-Target Predictions: Comparing Different Parallel Implementations of M3GP.
Complex., 2018

Low-Power Storage Bricks and Bioinformatics on Systems-On-Chip.
Proceedings of the 26th Euromicro International Conference on Parallel, 2018

Computing Empirical P-Values for Estimating Gene-Gene Interactions in Genome-Wide Association Studies: A Parallel Computing Approach.
Proceedings of the 26th Euromicro International Conference on Parallel, 2018

Parallelizable Strategy for the Estimation of the 3D Structure of Biological Macromolecules.
Proceedings of the 26th Euromicro International Conference on Parallel, 2018

High Performance Computing for Haplotyping: Models and Platforms.
Proceedings of the Euro-Par 2018: Parallel Processing Workshops, 2018

2017
Epistasis analysis reveals associations between gene variants and bipolar disorder.
PeerJ Prepr., 2017

NuChart-II: The road to a fast and scalable tool for Hi-C data analysis.
Int. J. High Perform. Comput. Appl., 2017

Porting bioinformatics applications from grid to cloud: A macromolecular surface analysis application case study.
Int. J. High Perform. Comput. Appl., 2017

VISPA2: a scalable pipeline for high-throughput identification and annotation of vector integration sites.
BMC Bioinform., 2017

Implementing a Space-Aware Stochastic Simulator on Low-Power Architectures: A Systems Biology Case Study.
Proceedings of the 25th Euromicro International Conference on Parallel, 2017

Low-Power Architectures for miRNA-Target Genome Wide Analysis.
Proceedings of the 25th Euromicro International Conference on Parallel, 2017

Scientific Workflows on Clouds with Heterogeneous and Preemptible Instances.
Proceedings of the Parallel Computing is Everywhere, 2017

Rank miRNA: a web tool for identifying polymorphisms altering miRNA target sites.
Proceedings of the International Conference on Computational Science, 2017

Performance and Economic Evaluations in Adopting Low Power Architectures: A Real Case Analysis.
Proceedings of the Economics of Grids, Clouds, Systems, and Services, 2017

2016
A novel molecular dynamics approach to evaluate the effect of phosphorylation on multimeric protein interface: the αB-Crystallin case study.
BMC Bioinform., 2016

PWHATSHAP: efficient haplotyping for future generation sequencing.
BMC Bioinform., 2016

How computer science can help in understanding the 3D genome architecture.
Briefings Bioinform., 2016

MicroRNA-Target Interaction: A Parallel Approach for Computing Pairing Energy.
Proceedings of the 24th Euromicro International Conference on Parallel, 2016

A Machine Learning Approach for the Integration of miRNA-Target Predictions.
Proceedings of the 24th Euromicro International Conference on Parallel, 2016

Combining Bayesian Approaches and Evolutionary Techniques for the Inference of Breast Cancer Networks.
Proceedings of the 8th International Joint Conference on Computational Intelligence, 2016

2015
Parallel Exploration of the Nuclear Chromosome Conformation with NuChart-II.
Proceedings of the 23rd Euromicro International Conference on Parallel, 2015

NuchaRt: Embedding High-Level Parallel Computing in R for Augmented Hi-C Data Analysis.
Proceedings of the Computational Intelligence Methods for Bioinformatics and Biostatistics, 2015

Clustering Protein Structures with Hadoop.
Proceedings of the Computational Intelligence Methods for Bioinformatics and Biostatistics, 2015

2014
Latest advances in distributed, parallel, and graphic processing unit accelerated approaches to computational biology.
Concurr. Comput. Pract. Exp., 2014

CUDA accelerated molecular surface generation.
Concurr. Comput. Pract. Exp., 2014

The WNoDeS Cloud Virtualization Framework: A Macromolecular Surface Analysis Application Case Study.
Proceedings of the 22nd Euromicro International Conference on Parallel, 2014

A CUDA Implementation of the Spatial TAU-Leaping in Crowded Compartments (STAUCC) Simulator.
Proceedings of the 22nd Euromicro International Conference on Parallel, 2014

The role of High Performance Computing in Bioinformatics.
Proceedings of the International Work-Conference on Bioinformatics and Biomedical Engineering, 2014

Evaluating mixed HTC/cloud approaches for parameter sweep applications in systems biology.
Proceedings of the International Work-Conference on Bioinformatics and Biomedical Engineering, 2014

NuChart-II: A Graph-Based Approach for Analysis and Interpretation of Hi-C Data.
Proceedings of the Computational Intelligence Methods for Bioinformatics and Biostatistics, 2014

A Fine-Grained CUDA Implementation of the Multi-objective Evolutionary Approach NSGA-II: Potential Impact for Computational and Systems Biology Applications.
Proceedings of the Computational Intelligence Methods for Bioinformatics and Biostatistics, 2014

2013
Sensitivity Analysis for Studying the Relation between biochemical reactions and metabolic phenotypes.
J. Bioinform. Comput. Biol., 2013

SNPranker 2.0: a gene-centric data mining tool for diseases associated SNP prioritization in GWAS.
BMC Bioinform., 2013

A Parallel Implementation of the Stau-DPP Stochastic Simulator for the Modelling of Biological Systems.
Proceedings of the 21st Euromicro International Conference on Parallel, 2013

2012
Molecular Mechanism of Allosteric Communication in Hsp70 Revealed by Molecular Dynamics Simulations.
PLoS Comput. Biol., 2012

IBDsite: a Galaxy-interacting, integrative database for supporting inflammatory bowel disease high throughput data analysis.
BMC Bioinform., 2012

A CUDA-based Implementation of the SSAKE Genomics Application.
Proceedings of the 20th Euromicro International Conference on Parallel, 2012

2011
Image-Based Surface Matching Algorithm Oriented to Structural Biology.
IEEE ACM Trans. Comput. Biol. Bioinform., 2011

Ontology-based resources for bioinformatics analysis.
Int. J. Metadata Semant. Ontologies, 2011

myMIR: a genome-wide microRNA targets identification and annotation tool.
Briefings Bioinform., 2011

Parallelization of the SSAKE Genomics Application.
Proceedings of the 19th International Euromicro Conference on Parallel, 2011

Grid Computing for Sensitivity Analysis of Stochastic Biological Models.
Proceedings of the Parallel Computing Technologies - 11th International Conference, 2011

2010
RSSsite: a reference database and prediction tool for the identification of cryptic Recombination Signal Sequences in human and murine genomes.
Nucleic Acids Res., 2010

SNPRanker: a tool for identification and scoring of SNPs associated to target genes.
J. Integr. Bioinform., 2010

A multilevel data integration resource for breast cancer study.
BMC Syst. Biol., 2010

Semi-automatic identification of punching areas for tissue microarray building: the tubular breast cancer pilot study.
BMC Bioinform., 2010

A Parallel Algorithm for Molecular Surface Matching Through Image Representation.
Proceedings of the 18th Euromicro Conference on Parallel, 2010

2009
The Human EST Ontology Explorer: a tissue-oriented visualization system for ontologies distribution in human EST collections.
BMC Bioinform., 2009

In silico saturation mutagenesis and docking screening for the analysis of protein-ligand interaction: the Endothelial Protein C Receptor case study.
BMC Bioinform., 2009

Parallel Decomposition of 3D Surfaces in Images of Local Descriptors for Molecular Screening.
Proceedings of the 17th Euromicro International Conference on Parallel, 2009

Ontological Enrichment of the <i>Genes-to-Systems Breast Cancer</i> Database.
Proceedings of the Metadata and Semantic Research - Third International Conference, 2009

Sys-Bio Gateway: a Framework of Bioinformatics Database Resources Oriented to Systems Biology.
Proceedings of the International Workshop on Portals for Life Sciences, 2009

2008
The cell cycle DB: a systems biology approach to cell cycle analysis.
Nucleic Acids Res., 2008

A parallel protein surface reconstruction system.
Int. J. Bioinform. Res. Appl., 2008

Ontology-based, Tissue MicroArray oriented, image centered tissue bank.
BMC Bioinform., 2008

Version VI of the ESTree db: an improved tool for peach transcriptome analysis.
BMC Bioinform., 2008

A Grid Service based Parallel Molecular Surface Reconstruction System.
Proceedings of the 16th Euromicro International Conference on Parallel, 2008

Enabling Parallel TMA Image Analysis in a Grid Environment.
Proceedings of the Second International Conference on Complex, 2008

A Visualization ToolKit Based Application for Representing Macromolecular Surfaces.
Proceedings of the Computational Intelligence Methods for Bioinformatics and Biostatistics, 2008

TMAinspect, an EGEE Framework for Tissue MicroArray Image Handling.
Proceedings of the 8th IEEE International Symposium on Cluster Computing and the Grid (CCGrid 2008), 2008

Images Based System for Surface Matching in Macromolecular Screening.
Proceedings of the 2008 IEEE International Conference on Bioinformatics and Biomedicine, 2008

2007
A data integration approach for cell cycle analysis oriented to model simulation in systems biology.
BMC Syst. Biol., 2007

GoSh: a web-based database for goat and sheep EST sequences.
Bioinform., 2007

Experimenting Grid Protocols to Improve Privacy Preservation in Efficient Distributed Image Processing.
Proceedings of the Parallel Computing: Architectures, 2007

A Parallel Workflow for the Reconstruction of Molecular Surfaces.
Proceedings of the Parallel Computing: Architectures, 2007

Tissue MicroArray: a Distributed Grid Approach for Image Analysis.
Proceedings of the From Genes to Personalized HealthCare: Grid Solutions for the Life Sciences, 2007

BGBlast: A BLAST Grid Implementation with Database Self-Updating and Adaptive Replication.
Proceedings of the From Genes to Personalized HealthCare: Grid Solutions for the Life Sciences, 2007

Parameter Estimation for Cell Cycle Ordinary Differential Equation (ODE) Models using a Grid Approach.
Proceedings of the From Genes to Personalized HealthCare: Grid Solutions for the Life Sciences, 2007

2006
High performance cDNA sequence analysis using grid technology.
J. Parallel Distributed Comput., 2006

Large Scale In Silico Screening on Grid Infrastructures
CoRR, 2006

High Performance GRID Based Implementation for Genomics and Protein Analysis.
Proceedings of the Challenges and Opportunities of HealthGrids, 2006


2005
High performance workflow implementation for protein surface characterization using grid technology.
BMC Bioinform., 2005

Using Parallel Isosurface Extraction in Superficial Molecular Modeling.
Proceedings of the 1st International Conference on Distributed Frameworks for Multimedia Applications (DFMA 2005), 2005


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