Luciano Milanesi

According to our database1, Luciano Milanesi authored at least 132 papers between 1992 and 2019.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

Legend:

Book 
In proceedings 
Article 
PhD thesis 
Other 

Links

On csauthors.net:

Bibliography

2019
The 2017 Network Tools and Applications in Biology (NETTAB) workshop: aims, topics and outcomes.
BMC Bioinformatics, 2019

isma: an R package for the integrative analysis of mutations detected by multiple pipelines.
BMC Bioinformatics, 2019

2018
A Scalable Genetic Programming Approach to Integrate miRNA-Target Predictions: Comparing Different Parallel Implementations of M3GP.
Complexity, 2018

An infrastructure for precision medicine through analysis of big data.
BMC Bioinformatics, 2018

2017
Epistasis analysis reveals associations between gene variants and bipolar disorder.
PeerJ PrePrints, 2017

NuChart-II: The road to a fast and scalable tool for Hi-C data analysis.
IJHPCA, 2017

VISPA2: a scalable pipeline for high-throughput identification and annotation of vector integration sites.
BMC Bioinformatics, 2017

iSmaRT: a toolkit for a comprehensive analysis of small RNA-Seq data.
Bioinformatics, 2017

iSmaRT: a toolkit for a comprehensive analysis of small RNA-Seq data.
Bioinformatics, 2017

Low-Power Architectures for miRNA-Target Genome Wide Analysis.
Proceedings of the 25th Euromicro International Conference on Parallel, 2017

2016
CUDA-quicksort: an improved GPU-based implementation of quicksort.
Concurrency and Computation: Practice and Experience, 2016

Stochastic neutral modelling of the Gut Microbiota's relative species abundance from next generation sequencing data.
BMC Bioinformatics, 2016

BITS 2015: the annual meeting of the Italian Society of Bioinformatics.
BMC Bioinformatics, 2016

Removing duplicate reads using graphics processing units.
BMC Bioinformatics, 2016

A novel molecular dynamics approach to evaluate the effect of phosphorylation on multimeric protein interface: the αB-Crystallin case study.
BMC Bioinformatics, 2016

Methods for the integration of multi-omics data: mathematical aspects.
BMC Bioinformatics, 2016

How computer science can help in understanding the 3D genome architecture.
Briefings in Bioinformatics, 2016

Systems medicine of inflammaging.
Briefings in Bioinformatics, 2016

MicroRNA-Target Interaction: A Parallel Approach for Computing Pairing Energy.
Proceedings of the 24th Euromicro International Conference on Parallel, 2016

A Machine Learning Approach for the Integration of miRNA-Target Predictions.
Proceedings of the 24th Euromicro International Conference on Parallel, 2016

A Infrastructure for Disease Prevention and Precision Medicine.
Proceedings of the 2nd International Workshop on Knowledge Discovery on the WEB, 2016

2015
Parallel Exploration of the Nuclear Chromosome Conformation with NuChart-II.
Proceedings of the 23rd Euromicro International Conference on Parallel, 2015

NuchaRt: Embedding High-Level Parallel Computing in R for Augmented Hi-C Data Analysis.
Proceedings of the Computational Intelligence Methods for Bioinformatics and Biostatistics, 2015

2014
CUDA accelerated molecular surface generation.
Concurrency and Computation: Practice and Experience, 2014

Guidelines for managing data and processes in bone and cartilage tissue engineering.
BMC Bioinformatics, 2014

A tool for mapping Single Nucleotide Polymorphisms using Graphics Processing Units.
BMC Bioinformatics, 2014

The WNoDeS Cloud Virtualization Framework: A Macromolecular Surface Analysis Application Case Study.
Proceedings of the 22nd Euromicro International Conference on Parallel, 2014

A CUDA Implementation of the Spatial TAU-Leaping in Crowded Compartments (STAUCC) Simulator.
Proceedings of the 22nd Euromicro International Conference on Parallel, 2014

Evaluating mixed HTC/cloud approaches for parameter sweep applications in systems biology.
Proceedings of the International Work-Conference on Bioinformatics and Biomedical Engineering, 2014

NuChart-II: A Graph-Based Approach for Analysis and Interpretation of Hi-C Data.
Proceedings of the Computational Intelligence Methods for Bioinformatics and Biostatistics, 2014

2013
Sensitivity Analysis for Studying the Relation between biochemical reactions and metabolic phenotypes.
J. Bioinformatics and Computational Biology, 2013

SNPranker 2.0: a gene-centric data mining tool for diseases associated SNP prioritization in GWAS.
BMC Bioinformatics, 2013

A Parallel Implementation of the Stau-DPP Stochastic Simulator for the Modelling of Biological Systems.
Proceedings of the 21st Euromicro International Conference on Parallel, 2013

Comparing Viral (HIV) and Bacterial (Staphylococcus aureus) Infection of the Bone Tissue.
Proceedings of the BIOINFORMATICS 2013 - Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms, Barcelona, Spain, 11, 2013

2012
Molecular Mechanism of Allosteric Communication in Hsp70 Revealed by Molecular Dynamics Simulations.
PLoS Computational Biology, 2012

Nanoinformatics: developing new computing applications for nanomedicine.
Computing, 2012

IBDsite: a Galaxy-interacting, integrative database for supporting inflammatory bowel disease high throughput data analysis.
BMC Bioinformatics, 2012

Literature Retrieval and Mining in Bioinformatics: State of the Art and Challenges.
Adv. Bioinformatics, 2012

A CUDA-based Implementation of the SSAKE Genomics Application.
Proceedings of the 20th Euromicro International Conference on Parallel, 2012

2011
Image-Based Surface Matching Algorithm Oriented to Structural Biology.
IEEE/ACM Trans. Comput. Biology Bioinform., 2011

Ontology-based resources for bioinformatics analysis.
IJMSO, 2011

A grid portal with robot certificates for bioinformatics phylogenetic analyses.
Concurrency and Computation: Practice and Experience, 2011

Modeling the cell cycle: From deterministic models to hybrid systems.
Biosystems, 2011

myMIR: a genome-wide microRNA targets identification and annotation tool.
Briefings in Bioinformatics, 2011

Parallelization of the SSAKE Genomics Application.
Proceedings of the 19th International Euromicro Conference on Parallel, 2011

Grid Computing for Sensitivity Analysis of Stochastic Biological Models.
Proceedings of the Parallel Computing Technologies - 11th International Conference, 2011

Solving Biclustering with a GRASP-Like Metaheuristic: Two Case-Studies on Gene Expression Analysis.
Proceedings of the Computational Intelligence Methods for Bioinformatics and Biostatistics, 2011

A Mathematical Model for the Enhanced Cytoplasmic Transport - How to Get (Faster) to the Nucleus.
Proceedings of the BIOINFORMATICS 2011, 2011

Population Stratification Analysis in Genome-Wide Association Studies.
Proceedings of the Mathematical Approaches to Polymer Sequence Analysis and Related Problems, 2011

Modeling Biochemical Pathways.
Proceedings of the Mathematical Approaches to Polymer Sequence Analysis and Related Problems, 2011

2010
RSSsite: a reference database and prediction tool for the identification of cryptic Recombination Signal Sequences in human and murine genomes.
Nucleic Acids Research, 2010

SNPRanker: a tool for identification and scoring of SNPs associated to target genes.
J. Integrative Bioinformatics, 2010

Overlapping Genes May Control Reprogramming of Mouse Somatic Cells into Induced Pluripotent Stem Cells (iPSCs) and Breast Cancer Stem Cells.
In Silico Biology, 2010

Grid Based Genome Wide Studies on Atrial Flutter.
J. Grid Comput., 2010

A multilevel data integration resource for breast cancer study.
BMC Systems Biology, 2010

Semi-automatic identification of punching areas for tissue microarray building: the tubular breast cancer pilot study.
BMC Bioinformatics, 2010

Complex Search, Ranks, and Biological Discovery: A User's Perspective.
Proceedings of the Search Computing, 2010

A Dynamic Parallel Approach to Recognize Tubular Breast Cancer for TMA Image Building.
Proceedings of the 18th Euromicro Conference on Parallel, 2010

A Parallel Algorithm for Molecular Surface Matching Through Image Representation.
Proceedings of the 18th Euromicro Conference on Parallel, 2010

Modelling Spatial Heterogeneity and Macromolecular Crowding with Membrane Systems.
Proceedings of the Membrane Computing, 2010

2009
Identification of functionally related genes using data mining and data integration: a breast cancer case study.
BMC Bioinformatics, 2009

Trends in modeling Biomedical Complex Systems.
BMC Bioinformatics, 2009

The Human EST Ontology Explorer: a tissue-oriented visualization system for ontologies distribution in human EST collections.
BMC Bioinformatics, 2009

In silico saturation mutagenesis and docking screening for the analysis of protein-ligand interaction: the Endothelial Protein C Receptor case study.
BMC Bioinformatics, 2009

The GENIUS Grid Portal and robot certificates: a new tool for e-Science.
BMC Bioinformatics, 2009

Towards a systems biology approach to mammalian cell cycle: modeling the entrance into S phase of quiescent fibroblasts after serum stimulation.
BMC Bioinformatics, 2009

Parallel Decomposition of 3D Surfaces in Images of Local Descriptors for Molecular Screening.
Proceedings of the 17th Euromicro International Conference on Parallel, 2009

Ontological Enrichment of the Genes-to-Systems Breast Cancer Database.
Proceedings of the Metadata and Semantic Research - Third International Conference, 2009

A Novel Variant of P Systems for the Modelling and Simulation of Biochemical Systems.
Proceedings of the Membrane Computing, 10th International Workshop, 2009

Sys-Bio Gateway: a Framework of Bioinformatics Database Resources Oriented to Systems Biology.
Proceedings of the International Workshop on Portals for Life Sciences, 2009

On the Performance of Large Scale Bayesian Phylogenetic Analyses with Grid Portals and Robot Certificates.
Proceedings of the International Workshop on Portals for Life Sciences, 2009

2008
The cell cycle DB: a systems biology approach to cell cycle analysis.
Nucleic Acids Research, 2008

An Unusal Distribution of 6-nt Sequences Near The Transcription Start Site.
J. Integrative Bioinformatics, 2008

A parallel protein surface reconstruction system.
IJBRA, 2008

Ontology-based, Tissue MicroArray oriented, image centered tissue bank.
BMC Bioinformatics, 2008

SNPLims: a data management system for genome wide association studies.
BMC Bioinformatics, 2008

Version VI of the ESTree db: an improved tool for peach transcriptome analysis.
BMC Bioinformatics, 2008

Reconstructing networks of pathways via significance analysis of their intersections.
BMC Bioinformatics, 2008

A Grid Service based Parallel Molecular Surface Reconstruction System.
Proceedings of the 16th Euromicro International Conference on Parallel, 2008

Enabling Parallel TMA Image Analysis in a Grid Environment.
Proceedings of the Second International Conference on Complex, 2008

A Visualization ToolKit Based Application for Representing Macromolecular Surfaces.
Proceedings of the Computational Intelligence Methods for Bioinformatics and Biostatistics, 2008

TMAinspect, an EGEE Framework for Tissue MicroArray Image Handling.
Proceedings of the 8th IEEE International Symposium on Cluster Computing and the Grid (CCGrid 2008), 2008

Bayesian Phylogeny on Grid.
Proceedings of the Bioinformatics Research and Development, 2008

Images Based System for Surface Matching in Macromolecular Screening.
Proceedings of the 2008 IEEE International Conference on Bioinformatics and Biomedicine, 2008

2007
Medical Informatics and Bioinformatics: A Bibliometric Study.
IEEE Trans. Information Technology in Biomedicine, 2007

CYCLONET - an integrated database on cell cycle regulation and carcinogenesis.
Nucleic Acids Research, 2007

Networks from Gene Expression Time Series: Characterization of Correlation Patterns.
I. J. Bifurcation and Chaos, 2007

A data integration approach for cell cycle analysis oriented to model simulation in systems biology.
BMC Systems Biology, 2007

Data handling strategies for high throughput pyrosequencers.
BMC Bioinformatics, 2007

Biowep: a workflow enactment portal for bioinformatics applications.
BMC Bioinformatics, 2007

SYMBIOmatics: Synergies in Medical Informatics and Bioinformatics - exploring current scientific literature for emerging topics.
BMC Bioinformatics, 2007

ESTuber db: an online database for Tuber borchii EST sequences.
BMC Bioinformatics, 2007

ProCMD: a database and 3D web resource for protein C mutants.
BMC Bioinformatics, 2007

Agents in bioinformatics, computational and systems biology.
Briefings in Bioinformatics, 2007

Experimenting Grid Protocols to Improve Privacy Preservation in Efficient Distributed Image Processing.
Proceedings of the Parallel Computing: Architectures, 2007

A Parallel Workflow for the Reconstruction of Molecular Surfaces.
Proceedings of the Parallel Computing: Architectures, 2007

Tissue MicroArray: a Distributed Grid Approach for Image Analysis.
Proceedings of the From Genes to Personalized HealthCare: Grid Solutions for the Life Sciences, 2007

BGBlast: A BLAST Grid Implementation with Database Self-Updating and Adaptive Replication.
Proceedings of the From Genes to Personalized HealthCare: Grid Solutions for the Life Sciences, 2007

An Agent Approach for Protein Function Analysis in a Grid Infrastructure.
Proceedings of the From Genes to Personalized HealthCare: Grid Solutions for the Life Sciences, 2007

Parameter Estimation for Cell Cycle Ordinary Differential Equation (ODE) Models using a Grid Approach.
Proceedings of the From Genes to Personalized HealthCare: Grid Solutions for the Life Sciences, 2007

2006
High performance cDNA sequence analysis using grid technology.
J. Parallel Distrib. Comput., 2006

Network integration of data and analysis of oncology interest.
J. Integrative Bioinformatics, 2006

An Agent System for Automatic Workflows Composition in Grid Environments.
ITSSA, 2006

High Performance GRID Based Implementation for Genomics and Protein Analysis.
Proceedings of the Challenges and Opportunities of HealthGrids, 2006


2005
Using Secondary Structure Information to Perform Multiple Alignment.
, 2005

Web services and workflow management for biological resources.
BMC Bioinformatics, 2005

Systematic analysis of human kinase genes: a large number of genes and alternative splicing events result in functional and structural diversity.
BMC Bioinformatics, 2005

High performance workflow implementation for protein surface characterization using grid technology.
BMC Bioinformatics, 2005

ESTree db: a Tool for Peach Functional Genomics.
BMC Bioinformatics, 2005

Overview of BITS2005, the Second Annual Meeting of the Italian Bioinformatics Society.
BMC Bioinformatics, 2005

Modelling the interaction of steroid receptors with endocrine disrupting chemicals.
BMC Bioinformatics, 2005

A Hybrid Genetic-Neural System for Predicting Protein Secondary Structure.
BMC Bioinformatics, 2005

From Context-Dependence of Mutations to Molecular Mechanisms of Mutagenesis.
Proceedings of the Biocomputing 2005, 2005

Using Parallel Isosurface Extraction in Superficial Molecular Modeling.
Proceedings of the 1st International Conference on Distributed Frameworks for Multimedia Applications (DFMA 2005), 2005

2003
Computational analysis of mutation spectra.
Briefings in Bioinformatics, 2003

2002
ASPD (Artificially Selected Proteins/Peptides Database): a database of proteins and peptides evolved in vitro.
Nucleic Acids Research, 2002

2001
Presence of ATG triplets in 5' untranslated regions of eukaryotic cDNAs correlates with a 'weak' context of the start codon.
Bioinformatics, 2001

2000
Prediction and Phylogenetic Analysis of Mammalian Short Interspersed Elements (SINEs).
Briefings in Bioinformatics, 2000

1999
GeneBuilder: interactive in silico prediction of gene structure.
Bioinformatics, 1999

Integrated databases and computer systems for studying eukaryotic gene expression.
Bioinformatics, 1999

1998
Molecular Probe Data Base (MPDB).
Nucleic Acids Research, 1998

GenExpress: A Computer System for Description, Analysis and Recognition of Regulatory Sequences in Eukaryotic Genome.
Proceedings of the 6th International Conference on Intelligent Systems for Molecular Biology (ISMB-98), Montréal, Québec, Canada, June 28, 1998

Fragment assembly system for DNA sequencing projects.
Proceedings of the Mathematical Support for Molecular Biology, 1998

1996
Gene structure prediction using information on homologous protein sequence.
Computer Applications in the Biosciences, 1996

Hamming-Clustering method for signals prediction in 5' and 3' regions of eukaryotic genes.
Computer Applications in the Biosciences, 1996

Computer Analysis and Recognition of the Transcription Regulatory Elements in Eukaryotic Genomes.
German Conference on Bioinformatics, 1996

1995
Eukaryotic promoter recognition by binding sites for transcription factors.
Computer Applications in the Biosciences, 1995

Computer Tool FUNSITE for Analysis of Eukaryotic Regulatory Genomic Sequences.
Proceedings of the Third International Conference on Intelligent Systems for Molecular Biology, 1995

1994
Data bank homology search algorithm with linear computation complexity.
Computer Applications in the Biosciences, 1994

1993
SITEVIDEO: a computer system for functional site analysis and recognition. Investigation of the human splice sites.
Computer Applications in the Biosciences, 1993

1992
Fast, statistically based alignment of amino acid sequences on the base of diagonal fragments of DOT-matrices.
Computer Applications in the Biosciences, 1992


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