Dennis Kostka

According to our database, Dennis Kostka authored at least 16 papers between 2004 and 2023.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2023

aenmd: annotating escape from nonsense-mediated decay for transcripts with protein-truncating variants.

Jonathan Klonowski, Qianqian Liang, Zeynep H. Coban Akdemir, Cecilia Lo, Dennis Kostka

Bioinform., September, 2023

Vaeda computationally annotates doublets in single-cell RNA sequencing data.

Hannah Schriever, Dennis Kostka

Bioinform., January, 2023

An intrinsically interpretable neural network architecture for sequence-to-function learning.

Ali Tugrul Balci, Mark Maher Ebeid, Panayiotis V. Benos, Dennis Kostka, Maria Chikina

Bioinform., 2023

2022

Non-negative Independent Factor Analysis disentangles discrete and continuous sources of variation in scRNA-seq data.

Weiguang Mao, Maziyar Baran Pouyan, Dennis Kostka, Maria Chikina

Bioinform., 2022

2020

scds: computational annotation of doublets in single-cell RNA sequencing data.

Abha S. Bais, Dennis Kostka

Bioinform., 2020

2019

Large-scale inference of competing endogenous RNA networks with sparse partial correlation.

Markus List, Azim Dehghani Amirabad, Dennis Kostka, Marcel H. Schulz

Bioinform., 2019

2018

Random forest based similarity learning for single cell RNA sequencing data.

Maziyar Baran Pouyan, Dennis Kostka

Bioinform., 2018

2014

Integrating Diverse Datasets Improves Developmental Enhancer Prediction.

Genevieve D. Erwin, Nir Oksenberg, Rebecca M. Truty, Dennis Kostka, Karl K. Murphy, Nadav Ahituv, Katherine S. Pollard, John A. Capra

PLoS Comput. Biol., 2014

Modeling DNA methylation dynamics with approaches from phylogenetics.

John A. Capra, Dennis Kostka

Bioinform., 2014

2008

Microarray Based Diagnosis Profits from Better Documentation of Gene Expression Signatures.

Dennis Kostka, Rainer Spang

PLoS Comput. Biol., 2008

Detecting hierarchical structure in molecular characteristics of disease using transitive approximations of directed graphs.

Juby Jacob, Marcel Jentsch, Dennis Kostka, Stefan Bentink, Rainer Spang

Bioinform., 2008

Analyzing gene perturbation screens with nested effects models in R and bioconductor.

Holger Fröhlich, Tim Beißbarth, Achim Tresch, Dennis Kostka, Juby Jacob, Rainer Spang, Florian Markowetz

Bioinform., 2008

2007

Methodology for exploring and communicating molecular characteristics of disease (Methodik zum Erkennen und zur Kommunikation molekularer Krankheitssignaturen)

Dennis Kostka

PhD thesis, 2007

Nested effects models for high-dimensional phenotyping screens.

Florian Markowetz, Dennis Kostka, Olga G. Troyanskaya, Rainer Spang

Proceedings of the Proceedings 15th International Conference on Intelligent Systems for Molecular Biology (ISMB) & 6th European Conference on Computational Biology (ECCB), 2007

A physical model for tiling array analysis.

Ho-Ryun Chung, Dennis Kostka, Martin Vingron

Proceedings of the Proceedings 15th International Conference on Intelligent Systems for Molecular Biology (ISMB) & 6th European Conference on Computational Biology (ECCB), 2007

2004

Finding disease specific alterations in the co-expression of genes.

Dennis Kostka, Rainer Spang

Proceedings of the Proceedings Twelfth International Conference on Intelligent Systems for Molecular Biology/Third European Conference on Computational Biology 2004, 2004