Marcel H. Schulz

According to our database, Marcel H. Schulz authored at least 36 papers between 2008 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2023

The adapted Activity-By-Contact model for enhancer-gene assignment and its application to single-cell data.

Dennis Hecker, Fatemeh Behjati-Ardakani, Alexander Karollus, Julien Gagneur, Marcel H. Schulz

Bioinform., February, 2023

Debugging Low Power Analog Neural Networks for Edge Computing.

Sascha Schmalhofer, Marwin Möller, Nikoletta Katsaouni, Marcel H. Schulz, Lars Hedrich

Proceedings of the Design, Automation & Test in Europe Conference & Exhibition, 2023

2022

A universal model of RNA.DNA: DNA triplex formation accurately predicts genome-wide RNA-DNA interactions.

Timothy Warwick, Sandra Seredinski, Nina M. Krause, Jasleen Kaur Bains, Lara Althaus, James A Oo, Alessandro Bonetti, Anne Dueck, Stefan Engelhardt, Harald Schwalbe, Matthias S. Leisegang, Marcel H. Schulz, Ralf P. Brandes

Briefings Bioinform., 2022

Energy efficient convolutional neural networks for arrhythmia detection.

Nikoletta Katsaouni, Florian Aul, Lukas Krischker, Sascha Schmalhofer, Lars Hedrich, Marcel H. Schulz

Array, 2022

2021

Fostering accessible online education using Galaxy as an e-learning platform.

Beatriz Serrano-Solano, Melanie Christine Föll, Cristóbal Gallardo-Alba, Anika Erxleben, Helena Rasche, Saskia D. Hiltemann, Matthias Fahrner, Mark J. Dunning, Marcel H. Schulz, Beáta Scholtz, Dave Clements, Anton Nekrutenko, Bérénice Batut, Björn A. Grüning

PLoS Comput. Biol., 2021

Machine learning for deciphering cell heterogeneity and gene regulation.

Michael Scherer, Florian Schmidt, Olga Lazareva, Jörn Walter, Jan Baumbach, Marcel H. Schulz, Markus List

Nat. Comput. Sci., 2021

Fast detection of differential chromatin domains with SCIDDO.

Peter Ebert, Marcel H. Schulz

Bioinform., 2021

2020

EpiRegio: analysis and retrieval of regulatory elements linked to genes.

Nina Baumgarten, Dennis Hecker, Sivarajan Karunanithi, Florian Schmidt, Markus List, Marcel H. Schulz

Nucleic Acids Res., 2020

Chromatyping: Reconstructing Nucleosome Profiles from NOMe Sequencing Data.

Shounak Chakraborty, Stefan Canzar, Tobias Marschall, Marcel H. Schulz

J. Comput. Biol., 2020

Improved linking of motifs to their TFs using domain information.

Nina Baumgarten, Florian Schmidt, Marcel H. Schulz

Bioinform., 2020

2019

On the problem of confounders in modeling gene expression.

Florian Schmidt, Marcel H. Schulz

Bioinform., 2019

TEPIC 2 - an extended framework for transcription factor binding prediction and integrative epigenomic analysis.

Florian Schmidt, Fabian Kern, Peter Ebert, Nina Baumgarten, Marcel H. Schulz

Bioinform., 2019

Large-scale inference of competing endogenous RNA networks with sparse partial correlation.

Markus List, Azim Dehghani Amirabad, Dennis Kostka, Marcel H. Schulz

Bioinform., 2019

2018

Predicting transcription factor binding using ensemble random forest models.

Fatemeh Behjati-Ardakani, Florian Schmidt, Marcel H. Schulz

F1000Research, 2018

JAMI: fast computation of conditional mutual information for ceRNA network analysis.

Andrea Hornáková, Markus List, Jilles Vreeken, Marcel H. Schulz

Bioinform., 2018

In silico read normalization using set multi-cover optimization.

Dilip A. Durai, Marcel H. Schulz

Bioinform., 2018

An ontology-based method for assessing batch effect adjustment approaches in heterogeneous datasets.

Florian Schmidt, Markus List, Engin Cukuroglu, Sebastian Köhler, Jonathan Göke, Marcel H. Schulz

Bioinform., 2018

2017

RegulatorTrail: a web service for the identification of key transcriptional regulators.

Tim Kehl, Lara Schneider, Florian Schmidt, Daniel Stöckel, Nico Gerstner, Christina Backes, Eckart Meese, Andreas Keller, Marcel H. Schulz, Hans-Peter Lenhof

Nucleic Acids Res., 2017

DNA-Seq Error Correction Based on Substring Indices.

David Weese, Marcel H. Schulz, Hugues Richard

Proceedings of the Algorithms for Next-Generation Sequencing Data, Techniques, 2017

Probabilistic Models for Error Correction of Nonuniform Sequencing Data.

Marcel H. Schulz, Ziv Bar-Joseph

Proceedings of the Algorithms for Next-Generation Sequencing Data, Techniques, 2017

2016

Multitask regression for condition-specific prioritization of miRNA targets in transcripts.

Azim Dehghani Amirabad, Marcel H. Schulz

PeerJ Prepr., 2016

Informed <i>k</i>mer selection for <i>de novo</i> transcriptome assembly.

Dilip A. Durai, Marcel H. Schulz

Bioinform., 2016

2015

A general concept for consistent documentation of computational analyses.

Peter Ebert, Fabian Müller, Karl Nordström, Thomas Lengauer, Marcel H. Schulz

Database J. Biol. Databases Curation, 2015

2014

Fiona: a parallel and automatic strategy for read error correction.

Marcel H. Schulz, David Weese, Manuel Holtgrewe, Viktoria Dimitrova, Sijia Niu, Knut Reinert, Hugues Richard

Bioinform., 2014

2012

DREM 2.0: Improved reconstruction of dynamic regulatory networks from time-series expression data.

Marcel H. Schulz, William E. Devanny, Anthony Gitter, Shan Zhong, Jason Ernst, Ziv Bar-Joseph

BMC Syst. Biol., 2012

<i>Oases: </i> robust <i>de novo</i> RNA-seq assembly across the dynamic range of expression levels.

Marcel H. Schulz, Daniel R. Zerbino, Martin Vingron, Ewan Birney

Bioinform., 2012

Estimation of pairwise sequence similarity of mammalian enhancers with word neighbourhood counts.

Jonathan Göke, Marcel H. Schulz, Julia Lasserre, Martin Vingron

Bioinform., 2012

Detecting genomic indel variants with exact breakpoints in single- and paired-end sequencing data using SplazerS.

Anne-Katrin Emde, Marcel H. Schulz, David Weese, Ruping Sun, Martin Vingron, Vera M. Kalscheuer, Stefan A. Haas, Knut Reinert

Bioinform., 2012

Bayesian ontology querying for accurate and noise-tolerant semantic searches.

Sebastian Bauer, Sebastian Köhler, Marcel H. Schulz, Peter N. Robinson

Bioinform., 2012

2011

Exact score distribution computation for ontological similarity searches.

Marcel H. Schulz, Sebastian Köhler, Sebastian Bauer, Peter N. Robinson

BMC Bioinform., 2011

DECOD: fast and accurate discriminative DNA motif finding.

Peter Huggins, Shan Zhong, Idit Shiff, Rachel Beckerman, Oleg Laptenko, Carol Prives, Marcel H. Schulz, Itamar Simon, Ziv Bar-Joseph

Bioinform., 2011

2009

Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads.

Kai Ye, Marcel H. Schulz, Quan Long, Rolf Apweiler, Zemin Ning

Bioinform., 2009

Exact Score Distribution Computation for Similarity Searches in Ontologies.

Marcel H. Schulz, Sebastian Köhler, Sebastian Bauer, Martin Vingron, Peter N. Robinson

Proceedings of the Algorithms in Bioinformatics, 9th International Workshop, 2009

2008

The generalised k-Truncated Suffix Tree for time-and space-efficient searches in multiple DNA or protein sequences.

Marcel H. Schulz, Sebastian Bauer, Peter N. Robinson

Int. J. Bioinform. Res. Appl., 2008

Fast and Adaptive Variable Order Markov Chain Construction.

Marcel H. Schulz, David Weese, Tobias Rausch, Andreas Döring, Knut Reinert, Martin Vingron

Proceedings of the Algorithms in Bioinformatics, 8th International Workshop, 2008

Efficient String Mining under Constraints Via the Deferred Frequency Index.

David Weese, Marcel H. Schulz

Proceedings of the Advances in Data Mining. Medical Applications, 2008