Maria Chikina

According to our database, Maria Chikina authored at least 12 papers between 2017 and 2026.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2026

"Frustratingly Easy" Domain Adaptation for Cross-Species Transcription Factor Binding Prediction.

Mark Maher Ebeid, Ali Tugrul Balci, Maria Chikina, Panayiotis V. Benos, Dennis Kostka

Proceedings of the Comparative Genomics - 23rd RECOMB International Workshop, 2026

2025

Prediction of local convergent shifts in evolutionary rates with <i>phyloConverge</i>.

Elysia Saputra, Weiguang Mao, Guillermo Hoffmann Meyer, Nathan Clark, Maria Chikina

Bioinform., 2025

2024

Best holdout assessment is sufficient for cancer transcriptomic model selection.

Jake Crawford, Maria Chikina, Casey S. Greene

Patterns, 2024

A hybrid constrained continuous optimization approach for optimal causal discovery from biological data.

Yuehua Zhu, Panayiotis V. Benos, Maria Chikina

Bioinform., 2024

InstaPrism: an R package for fast implementation of BayesPrism.

Mengying Hu, Maria Chikina

Bioinform., 2024

2023

An intrinsically interpretable neural network architecture for sequence-to-function learning.

Ali Tugrul Balci, Mark Maher Ebeid, Panayiotis V. Benos, Dennis Kostka, Maria Chikina

Bioinform., 2023

2022

Non-negative Independent Factor Analysis disentangles discrete and continuous sources of variation in scRNA-seq data.

Weiguang Mao, Maziyar Baran Pouyan, Dennis Kostka, Maria Chikina

Bioinform., 2022

2021

DataRemix: a universal data transformation for optimal inference from gene expression datasets.

Weiguang Mao, Javad Rahimikollu, Ryan Hausler, Maria Chikina

Bioinform., 2021

2020

Causal network perturbations for instance-specific analysis of single cell and disease samples.

Kristina Buschur, Maria Chikina, Panayiotis V. Benos

Bioinform., 2020

2019

RERconverge: an R package for associating evolutionary rates with convergent traits.

Amanda Kowalczyk, Wynn K. Meyer, Raghavendran Partha, Weiguang Mao, Nathan L. Clark, Maria Chikina

Bioinform., 2019

2018

Coloc-stats: a unified web interface to perform colocalization analysis of genomic features.

Boris Simovski, Chakravarthi Kanduri, Sveinung Gundersen, Dmytro Titov, Diana Domanska, Christoph Bock, Lara Bossini-Castillo, Maria Chikina, Alexander V. Favorov, Ryan M. Layer, Andrey A. Mironov, Aaron R. Quinlan, Nathan C. Sheffield, Gosia Trynka, Geir Kjetil Sandve

Nucleic Acids Res., 2018

2017

Phase Conductor on Multi-layered Attentions for Machine Comprehension.

Rui Liu, Wei Wei, Weiguang Mao, Maria Chikina

CoRR, 2017