Dong Si
Orcid: 0000-0001-7039-2589
According to our database1,
Dong Si
authored at least 45 papers
between 2011 and 2023.
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Bibliography
2023
Fast and automated protein-DNA/RNA macromolecular complex modeling from cryo-EM maps.
Briefings Bioinform., March, 2023
2022
BMC Bioinform., 2022
ZoomQA: residue-level protein model accuracy estimation with machine learning on sequential and 3D structural features.
Briefings Bioinform., 2022
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022
Deep graph learning to estimate protein model quality using structural constraints from multiple sequence alignments.
Proceedings of the BCB '22: 13th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics, Northbrook, Illinois, USA, August 7, 2022
2021
A Raspberry Pi-Based Traumatic Brain Injury Detection System for Single-Channel Electroencephalogram.
Sensors, 2021
Self-Attention Generative Adversarial Network for Iterative Reconstruction of CT Images.
CoRR, 2021
Artificial Intelligence Advances for De Novo Molecular Structure Modeling in Cryo-EM.
CoRR, 2021
Dementia Detection using Transformer-Based Deep Learning and Natural Language Processing Models.
Proceedings of the 9th IEEE International Conference on Healthcare Informatics, 2021
2020
TopQA: a topological representation for single-model protein quality assessment with machine learning.
Int. J. Comput. Biol. Drug Des., 2020
A Wizard-of-Oz Interface and Persona-based Methodology for Collecting Health Counseling Dialog.
Proceedings of the Extended Abstracts of the 2020 CHI Conference on Human Factors in Computing Systems, 2020
2019
Proceedings of the 31st IEEE International Conference on Tools with Artificial Intelligence, 2019
Proceedings of the 3rd ACM SIGSPATIAL International Workshop on Prediction of Human Mobility, 2019
Proceedings of the 10th ACM International Conference on Bioinformatics, 2019
2018
Beta-Barrel Detection for Medium Resolution Cryo-Electron Microscopy Density Maps Using Genetic Algorithms and Ray Tracing.
J. Comput. Biol., 2018
Machine Learning Classification of Tree Cover Type and Application to Forest Management.
Int. J. Multim. Data Eng. Manag., 2018
GPU Accelerated Ray Tracing for the Beta-Barrel Detection from Three-Dimensional Cryo-EM Maps.
Proceedings of the Bioinformatics Research and Applications - 14th International Symposium, 2018
Proceedings of the 40th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2018
Proceedings of the 40th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2018
Proceedings of the 40th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2018
Who's Next: Evaluating Attrition with Machine Learning Algorithms and Survival Analysis.
Proceedings of the Big Data - BigData 2018, 2018
EMNets: A Convolutional Autoencoder for Protein Surface Retrieval Based on Cryo-Electron Microscopy Imaging.
Proceedings of the 2018 ACM International Conference on Bioinformatics, 2018
Deep Learning for Resolution Validation of Three Dimensional Cryo-Electron Microscopy Density Maps.
Proceedings of the 2018 ACM International Conference on Bioinformatics, 2018
2017
Proceedings of the Machine Learning and Data Mining in Pattern Recognition, 2017
Proceedings of the Machine Learning and Data Mining in Pattern Recognition, 2017
Classification of Brain Activity Using Brainwaves Recorded by Consumer-grade EEG Devices.
Proceedings of the Advances in Mass Data Analysis of Images and Signals in Medicine, 2017
Genetic Algorithm Based Beta-Barrel Detection for Medium Resolution Cryo-EM Density Maps.
Proceedings of the Bioinformatics Research and Applications - 13th International Symposium, 2017
Addressing Forest Management Challenges by Refining Tree Cover Type Classification with Machine Learning Models.
Proceedings of the 2017 IEEE International Conference on Information Reuse and Integration, 2017
Analyze NYC Transportation to Mitigate Speeding and Explore New Business Models Using Machine Learning.
Proceedings of the International Conference on Compute and Data Analysis, 2017
Prediction of Injuries and Fatalities in Aviation Accidents through Machine Learning.
Proceedings of the International Conference on Compute and Data Analysis, 2017
Comparison of Feature Reduction Methods and Machine Learning Models for Breast Cancer Diagnosis.
Proceedings of the International Conference on Compute and Data Analysis, 2017
Proceedings of the 8th ACM International Conference on Bioinformatics, 2017
Proceedings of the 8th ACM International Conference on Bioinformatics, 2017
2016
Deep convolutional neural networks for detecting secondary structures in protein density maps from cryo-electron microscopy.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2016
Proceedings of the 7th ACM International Conference on Bioinformatics, 2016
2015
Detection of Secondary Structures from 3D Protein Images of Medium Resolutions and its Challenges.
Proceedings of the Image and Graphics - 8th International Conference, 2015
2014
Combining image processing and modeling to generate traces of beta-strands from cryo-EM density images of beta-barrels.
Proceedings of the 36th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2014
Proceedings of the 5th ACM Conference on Bioinformatics, 2014
2013
Proceedings of the ACM Conference on Bioinformatics, 2013
A Constrained K-shortest Path Algorithm to Rank the Topologies of the Protein Secondary Structure Elements Detected in CryoEM Volume Maps.
Proceedings of the ACM Conference on Bioinformatics, 2013
2012
Improved Efficiency in Cryo-EM Secondary Structure Topology Determination from Inaccurate Data.
J. Bioinform. Comput. Biol., 2012
Proceedings of the 2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2012
Building the initial chain of the proteins through de novo modeling of the cryo-electron microscopy volume data at the medium resolutions.
Proceedings of the ACM International Conference on Bioinformatics, 2012
2011
A Constraint Dynamic Graph Approach to Identify the Secondary Structure Topology from cryoEM Density Data in Presence of Errors.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2011