Mohammad Zubair

According to our database1, Mohammad Zubair
  • authored at least 124 papers between 1990 and 2017.
  • has a "Dijkstra number"2 of three.

Timeline

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Bibliography

2017
An Effective Computational Method Incorporating Multiple Secondary Structure Predictions in Topology Determination for Cryo-EM Images.
IEEE/ACM Trans. Comput. Biology Bioinform., 2017

GPU-accelerated high-fidelity simulation of beam-beam effects in particle colliders.
Proceedings of the Summer Simulation Multi-Conference, 2017

Learning Word Embeddings in Parallel by Alignment.
Proceedings of the 2017 International Conference on High Performance Computing & Simulation, 2017

A Machine Learning Approach for Efficient Parallel Simulation of Beam Dynamics on GPUs.
Proceedings of the 46th International Conference on Parallel Processing, 2017

2016
A portable, extensible and fast stochastic volatility model calibration using multi and many-core processors.
Concurrency and Computation: Practice and Experience, 2016

Optimizing a Multiple Right-Hand Side Dslash Kernel for Intel Knights Corner.
Proceedings of the High Performance Computing, 2016

An Optimized Multicolor Point-Implicit Solver for Unstructured Grid Applications on Graphics Processing Units.
Proceedings of the 6th Workshop on Irregular Applications: Architecture and Algorithms, 2016

Memory-Efficient Parallel Simulation of Electron Beam Dynamics Using GPUs.
Proceedings of the 23rd IEEE International Conference on High Performance Computing, 2016

Challenges in matching secondary structures in cryo-EM: An exploration.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2016

2015
A Dynamic Programming Algorithm for Finding the Optimal Placement of a Secondary Structure Topology in Cryo-EM Data.
Journal of Computational Biology, 2015

ISQuest: finding insertion sequences in prokaryotic sequence fragment data.
Bioinformatics, 2015

High-fidelity simulation of collective effects in electron beams using an innovative parallel method.
Proceedings of the Conference on Summer Computer Simulation, 2015

A Novel Computational Method for Deriving Protein Secondary Structure Topologies Using Cryo-EM Density Maps and Multiple Secondary Structure Predictions.
Proceedings of the Bioinformatics Research and Applications - 11th International Symposium, 2015

2014
Solving the Secondary Structure MatchingProblem in Cryo-EM De Novo ModelingUsing a Constrained $K$-Shortest Path Graph Algorithm.
IEEE/ACM Trans. Comput. Biology Bioinform., 2014

Accelerating option risk analytics in R using GPUs.
Proceedings of the 2014 Spring Simulation Multiconference, 2014

A portable and fast stochastic volatility model calibration using multi and many-core processors.
Proceedings of the 7th Workshop on High Performance Computational Finance, 2014

Maximal clique enumeration for large graphs on hadoop framework.
Proceedings of the first workshop on Parallel programming for analytics applications, 2014

pbitMCE: A bit-based approach for maximal clique enumeration on multicore processors.
Proceedings of the 20th IEEE International Conference on Parallel and Distributed Systems, 2014

ParK: An efficient algorithm for k-core decomposition on multicore processors.
Proceedings of the 2014 IEEE International Conference on Big Data, 2014

Big data challenges for estimating genome assembler quality.
Proceedings of the 5th ACM Conference on Bioinformatics, 2014

2013
High-performance implementation of planted motif problem on multicore and GPU.
Concurrency and Computation: Practice and Experience, 2013

Genome Assembly on a Multicore System.
Proceedings of the 12th IEEE International Conference on Trust, 2013

Calibration of stochastic volatility models on a multi-core CPU cluster.
Proceedings of WHPCF'13: 6th Workshop on High Performance Computational Finance, 2013

An Efficient Deterministic Parallel Algorithm for Adaptive Multidimensional Numerical Integration on GPUs.
Proceedings of the 42nd International Conference on Parallel Processing, 2013

A memory efficient algorithm for adaptive multidimensional integration with multiple GPUs.
Proceedings of the 20th Annual International Conference on High Performance Computing, 2013

A Constrained K-shortest Path Algorithm to Rank the Topologies of the Protein Secondary Structure Elements Detected in CryoEM Volume Maps.
Proceedings of the ACM Conference on Bioinformatics, 2013

2012
Upper and lower I/O bounds for pebbling r-pyramids.
J. Discrete Algorithms, 2012

Improved Efficiency in Cryo-EM Secondary Structure Topology Determination from Inaccurate Data.
J. Bioinformatics and Computational Biology, 2012

Vertex isoperimetric parameter of a Computation Graph.
Int. J. Found. Comput. Sci., 2012

High Performance Implementation of an Econometrics and Financial Application on GPUs.
Proceedings of the 2012 SC Companion: High Performance Computing, 2012

Building the initial chain of the proteins through de novo modeling of the cryo-electron microscopy volume data at the medium resolutions.
Proceedings of the ACM International Conference on Bioinformatics, 2012

2011
Ranking Valid Topologies of the Secondary Structure Elements Using a Constraint Graph.
J. Bioinformatics and Computational Biology, 2011

Comparison of ontology reasoning systems using custom rules.
Proceedings of the International Conference on Web Intelligence, Mining and Semantics, 2011

High performance implementation of planted motif problem using suffix trees.
Proceedings of the 2011 International Conference on High Performance Computing & Simulation, 2011

Performance Evaluation of Oracle Semantic Technologies with Respect to User Defined Rules.
Proceedings of the 2011 Database and Expert Systems Applications, 2011

Strong I/O Lower Bounds for Binomial and FFT Computation Graphs.
Proceedings of the Computing and Combinatorics - 17th Annual International Conference, 2011

A Constraint Dynamic Graph Approach to Identify the Secondary Structure Topology from cryoEM Density Data in Presence of Errors.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2011

2010
Cache-optimal algorithms for option pricing.
ACM Trans. Math. Softw., 2010

Scheduling-capable autonomic manager for policy-based IT change management system.
Enterprise IS, 2010

Upper and Lower I/O Bounds for Pebbling r-Pyramids.
Proceedings of the Combinatorial Algorithms - 21st International Workshop, 2010

An efficient multicore implementation of planted motif problem.
Proceedings of the 2010 International Conference on High Performance Computing & Simulation, 2010

A collaborative faceted categorization system - user interactions.
Proceedings of the Publishing in the networked world: Transforming the Nature of Communication, 2010

2009
Evaluating multicore algorithms on the unified memory model.
Scientific Programming, 2009

Automated Support for a Collaborative System to Organize a Collection using Facets.
Proceedings of the Rethinking Electronic Publishing: Innovation in Communication Paradigms and Technologies, 2009

Towards Energy Efficient Change Management in a Cloud Computing Environment.
Proceedings of the Scalability of Networks and Services, 2009

2008
Freelib: a peer-to-peer-based digital library architecture.
World Digital Libraries, 2008

A unified model for multicore architectures.
Proceedings of the 1st international forum on Next-generation multicore/manycore technologies, 2008

High Performance Implementation of Binomial Option Pricing.
Proceedings of the Computational Science and Its Applications - ICCSA 2008, International Conference, Perugia, Italy, June 30, 2008

Efficient Parallel Implementations of Binomial Tree Option Price Valuation.
Proceedings of the ISCA 21st International Conference on Parallel and Distributed Computing and Communication Systems, 2008

2007
A Scriptable, Statistical Oracle for a Metadata Extraction System.
Proceedings of the Seventh International Conference on Quality Software (QSIC 2007), 2007

Infrastructure-Aware Autonomic Manager for Change Management.
Proceedings of the 8th IEEE International Workshop on Policies for Distributed Systems and Networks (POLICY 2007), 2007

Automated Template-Based Metadata Extraction Architecture.
Proceedings of the Asian Digital Libraries. Looking Back 10 Years and Forging New Frontiers, 2007

Collaborative classification of growing collections with evolving facets.
Proceedings of the HYPERTEXT 2007, 2007

Framework for Information Sharing Across Multiple Government Agencies under Dynamic Access Policies.
Proceedings of the The Second International Conference on Availability, 2007

2006
A dynamic approach to make CDS/ISIS databases interoperable over the internet using the OAI protocol.
Program, 2006

Search Engine Coverage of the OAI-PMH Corpus.
IEEE Internet Computing, 2006

Synchronization and Multiple Group Server Support for Kepler.
Proceedings of the ICEIS 2006, 2006

Harvesting social knowledge from folksonomies.
Proceedings of the HYPERTEXT 2006, 2006

Automated Building of OAI Compliant Repository from Legacy Collection.
Proceedings of the Digital Spectrum: Integrating Technology and Culture - Proceedings of the 10th International Conference on Electronic Publishing held in Bansko, 2006

Freelib: Peer-to-peer-based Digital Libraries.
Proceedings of the 20th International Conference on Advanced Information Networking and Applications (AINA 2006), 2006

2005
Approaches to make CDS/ISIS databases interoperable with OAI-compliant digital libraries.
Program, 2005

Lessons Learned with Arc, an OAI-PMH Service Provider.
Library Trends, 2005

A High Performance Implementation of an OAI-Based Federation Service.
Proceedings of the 11th International Conference on Parallel and Distributed Systems, 2005

A Standards-Based Approach for Supporting Dynamic Access Policies for a Federated Digital Library.
Proceedings of the Digital Libraries: Implementing Strategies and Sharing Experiences, 2005

Similarity and Duplicate Detection System for an OAI Compliant Federated Digital Library.
Proceedings of the Research and Advanced Technology for Digital Libraries, 2005

A Flexible Framework for Content-Based Access Management for Federated Digital Libraries.
Proceedings of the Research and Advanced Technology for Digital Libraries, 2005

A Comparative Study of Specification Models for Autonomic Access Control of Digital Rights.
Proceedings of the Digital Rights Management: Technologies, 2005

GRID Based Federated Digital Library.
Proceedings of the Second Conference on Computing Frontiers, 2005

Efficient Discovery Service for a Digital Library of 3D Models.
Proceedings of the Fifth International Conference on 3D Digital Imaging and Modeling (3DIM 2005), 2005

2004
Light-weight communal digital libraries.
Proceedings of the ACM/IEEE Joint Conference on Digital Libraries, 2004

Access Management in Federated Digital Libraries.
Proceedings of the IADIS International Conference WWW/Internet 2004, 2004

Enhancing Kepler Usability and Performance.
Proceedings of the Research and Advanced Technology for Digital Libraries, 2004

2003
Repository Synchronization in the OAI Framework.
Proceedings of the ACM/IEEE 2003 Joint Conference on Digital Libraries (JCDL 2003), 2003

The Dienst-OAI Gateway.
Proceedings of the ACM/IEEE 2003 Joint Conference on Digital Libraries (JCDL 2003), 2003

Challenges in Building Federation Services over Harvested Metadata.
Proceedings of the Digital Libraries: Technology and Management of Indigenous Knowledge for Global Access, 2003

2002
Federated Searching Interface Techniques for Heterogeneous OAI Repositories.
J. Digit. Inf., 2002

Fast pseudorandom-number generators with modulus 2k or 2k - 1 using fused multiply-ad.
IBM Journal of Research and Development, 2002

XML-based visual specification of multidisciplinary applications.
Future Generation Comp. Syst., 2002

A Scalable Architecture for Harvest-Based Digital Libraries: The ODU/Southampton Experiments.
D-Lib Magazine, 2002

A Scalable Architecture for Harvest-Based Digital Libraries - The ODU/Southampton Experiments
CoRR, 2002

DL-COTF: an XML based digital library for U. S. Navy's operational test and evaluation force.
Proceedings of the 2002 ACM Symposium on Applied Computing (SAC), 2002

Database and digital library technologies: track chairs message.
Proceedings of the 2002 ACM Symposium on Applied Computing (SAC), 2002

DP9: an OAI gateway service for web crawlers.
Proceedings of the ACM/IEEE Joint Conference on Digital Libraries, 2002

Preservation and transition of NCSTRL using an OAI-based architecture.
Proceedings of the ACM/IEEE Joint Conference on Digital Libraries, 2002

Enhanced Kepler Framework for Self-Archiving .
Proceedings of the 31st International Conference on Parallel Processing Workshops (ICPP 2002 Workshops), 2002

A Resource Brokering Infrastructure for Computational Grids.
Proceedings of the High Performance Computing, 2002


Archon - A Digital Library that Federates Physics Collections.
Proceedings of the 2002 International Conference on Dublin Core and Metadata Applications, 2002

Digital library framework for progressive compressed 3D models.
Proceedings of the Conference on Three-Dimensional Image Capture and Applications V, 2002

2001
Enhancing Jini for Use Across Non-Multicastable Networks.
Operating Systems Review, 2001

Kepler - An OAI Data/Service Provider for the Individual.
D-Lib Magazine, 2001

Arc - An OAI Service Provider for Digital Library Federation.
D-Lib Magazine, 2001

Personalized Portal for Wireless Devices.
Proceedings of the Poster Proceedings of the Tenth International World Wide Web Conference, 2001

XML Based Scientific Data Management Facility.
Proceedings of WebNet 2001, 2001

An Automated Classification System and Associated Digital Library Services.
Proceedings of the New Developments in Digital Libraries, 2001

Arc: an OAI service provider for cross-archive searching.
Proceedings of the ACM/IEEE Joint Conference on Digital Libraries, 2001

XML-Based Visual Specification of Multidisciplinary Applications.
Proceedings of the First IEEE International Symposium on Cluster Computing and the Grid (CCGrid 2001), 2001

2000
The UPS Prototype: An Experimental End-User Service across E-Print Archives.
D-Lib Magazine, 2000

Scalable Digital Libraries Based on NCSTRL/Dienst.
Proceedings of the Research and Advanced Technology for Digital Libraries, 2000

1999
Smart Objects, Dumb Archives: A User-Centric, Layered Digital Library Framework.
D-Lib Magazine, 1999

EDI Transactions over the Web.
Proceedings of WebNet 99, 1999

Arcade: A Web-Java Based Framework for Distributed Computing.
Proceedings of WebNet 99, 1999

SODA: Smart Objects, Dumb Archives.
Proceedings of the Research and Advanced Technology for Digital Libraries, 1999

1998
A Real Time Internet Auction System.
Proceedings of WebNet 98, 1998

NCSTRL+: Adding Multi-Discipline and Multi-Genre Support to the Dienst Protocol Using Clusters and Buckets.
Proceedings of the IEEE Forum on Reasearch and Technology Advances in Digital Libraries, 1998

1997
Web-based Framework for Distributed Computing.
Concurrency - Practice and Experience, 1997

1996
Performance Tuning IBM RS/6000 POWER2 Systems.
Proceedings of the Applied Parallel Computing, 1996

High performance algorithms for MPEG motion estimation.
Proceedings of the 1996 IEEE International Conference on Acoustics, 1996

A high performance software implementation of MPEG audio encoder.
Proceedings of the 1996 IEEE International Conference on Acoustics, 1996

1995
High-Performance Parallel Implementations of the NAS Kernel Benchmarks on the IBM SP2.
IBM Systems Journal, 1995

A Scalable Parallel Block Algorithm for Band Cholesky Factorization.
Proceedings of the Seventh SIAM Conference on Parallel Processing for Scientific Computing, 1995

1994
A General Purpose Subroutine for Fast Fourier Transform on a Distributed Memory Parallel Machine.
Parallel Computing, 1994

A high-performance matrix-multiplication algorithm on a distributed-memory parallel computer, using overlapped communication.
IBM Journal of Research and Development, 1994

Exploiting functional parallelism of POWER2 to design high-performance numerical algorithms.
IBM Journal of Research and Development, 1994

Improving performance of linear algebra algorithms for dense matrices, using algorithmic prefetch.
IBM Journal of Research and Development, 1994

A high performance parallel algorithm for 1-D FFT.
Proceedings of the Proceedings Supercomputing '94, 1994

Scientific Computing Using pPVM.
Proceedings of the 1994 International Conference on Parallel Processing, 1994

A Very High-Performance Algorithm for NAS EP Benchmark.
Proceedings of the High-Performance Computing and Networking, 1994

1992
A variable precision approach to speedup iterative schemes on fine grained parallel machines (short communication).
Parallel Computing, 1992

A High Performance Algorithm Using Pre-Processing for the Sparse Matrix-Vector Multiplication.
Proceedings of the Proceedings Supercomputing '92, 1992

Multiprocessor Architectures for High Speed Networks: A Performance Study.
Proceedings of the Algorithms, Software, Architecture, 1992

1991
Implementation of an Oversize Neural Network on DAP-510.
Proceedings of the Fifth International Parallel Processing Symposium, Proceedings, Anaheim, California, USA, April 30, 1991

1990
An optimal speedup algorithm for the measure problem.
Parallel Computing, 1990

Embeddings on a Boolean Cube.
BIT, 1990


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