Dongxiao Zhu

Xiangyu Zhou

Saleh Zare Zade

Mohammad Amin Roshani

Douglas Zytko

CoRR, 2024

MFABA: A More Faithful and Accelerated Boundary-Based Attribution Method for Deep Neural Networks.

[BibT_eX]

[DOI]

Kim-Kwang Raymond Choo

Proceedings of the Thirty-Eighth AAAI Conference on Artificial Intelligence, 2024

2023

FedDRO: Federated Compositional Optimization for Distributionally Robust Learning.

[BibT_eX]

[DOI]

CoRR, 2023

GeoSAM: Fine-tuning SAM with Sparse and Dense Visual Prompting for Automated Segmentation of Mobility Infrastructure.

[BibT_eX]

[DOI]

CoRR, 2023

Hijacking Large Language Models via Adversarial In-Context Learning.

[BibT_eX]

[DOI]

Xiangyu Zhou

CoRR, 2023

Interpretability-Aware Vision Transformer.

[BibT_eX]

[DOI]

CoRR, 2023

Towards Trustworthy Artificial Intelligence for Equitable Global Health.

[BibT_eX]

[DOI]

Jake Okechukwu Effoduh

Rebecca Hwa

Serena Jingchuan Guo

Laleh Seyyed-Kalantari

Sylvia Kiwuwa Muyingo

CoRR, 2023

Auto-Prompting SAM for Mobile Friendly 3D Medical Image Segmentation.

[BibT_eX]

[DOI]

CoRR, 2023

Fairness-aware Vision Transformer via Debiased Self-Attention.

[BibT_eX]

[DOI]

CoRR, 2023

Towards Trauma-Informed Data Donation of Sexual Experience in Online Dating to Improve Sexual Risk Detection AI.

[BibT_eX]

[DOI]

Proceedings of the Adjunct Proceedings of the 36th Annual ACM Symposium on User Interface Software and Technology, 2023

FocalUNETR: A Focal Transformer for Boundary-Aware Prostate Segmentation Using CT Images.

[BibT_eX]

[DOI]

Rafi Ibn Sultan

Hassan Bagher-Ebadian

Prashant Khanduri

Indrin J. Chetty

Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2023, 2023

Negative Flux Aggregation to Estimate Feature Attributions.

[BibT_eX]

[DOI]

Proceedings of the Thirty-Second International Joint Conference on Artificial Intelligence, 2023

Learning Compact Features via In-Training Representation Alignment.

[BibT_eX]

[DOI]

Proceedings of the Thirty-Seventh AAAI Conference on Artificial Intelligence, 2023

2022

FocalUNETR: A Focal Transformer for Boundary-aware Segmentation of CT Images.

[BibT_eX]

[DOI]

Hassan Bagher-Ebadian

Vikram Goddla

Indrin J. Chetty

CoRR, 2022

Saliency Guided Adversarial Training for Learning Generalizable Features with Applications to Medical Imaging Classification System.

[BibT_eX]

[DOI]

CoRR, 2022

Coupling User Preference with External Rewards to Enable Driver-centered and Resource-aware EV Charging Recommendation.

[BibT_eX]

[DOI]

Proceedings of the Machine Learning and Knowledge Discovery in Databases, 2022

AttCAT: Explaining Transformers via Attentive Class Activation Tokens.

[BibT_eX]

[DOI]

Proceedings of the Advances in Neural Information Processing Systems 35: Annual Conference on Neural Information Processing Systems 2022, 2022

Tiny RNN Model with Certified Robustness for Text Classification.

[BibT_eX]

[DOI]

Supriya Tumkur Suresh Kumar

Marco Brocanelli

Proceedings of the International Joint Conference on Neural Networks, 2022

Counterfactual Interpolation Augmentation (CIA): A Unified Approach to Enhance Fairness and Explainability of DNN.

[BibT_eX]

[DOI]

Proceedings of the Thirty-First International Joint Conference on Artificial Intelligence, 2022

2021

Tackling ordinal regression problem for heterogeneous data: sparse and deep multi-task learning approaches.

[BibT_eX]

[DOI]

Lu Wang

Data Min. Knowl. Discov., 2021

Adversarially Robust and Explainable Model Compression with On-Device Personalization for Text Classification.

[BibT_eX]

[DOI]

Supriya Tumkur Suresh Kumar

Marco Brocanelli

CoRR, 2021

Defending Against Adversarial Attacks On Medical Imaging Ai System, Classification Or Detection?

[BibT_eX]

[DOI]

Deng Pan

Proceedings of the 18th IEEE International Symposium on Biomedical Imaging, 2021

Explaining Deep Neural Network Models with Adversarial Gradient Integration.

[BibT_eX]

[DOI]

Deng Pan

Proceedings of the Thirtieth International Joint Conference on Artificial Intelligence, 2021

Improving Adversarial Robustness via Probabilistically Compact Loss with Logit Constraints.

[BibT_eX]

[DOI]

Proceedings of the Thirty-Fifth AAAI Conference on Artificial Intelligence, 2021

2020

COVID-MobileXpert: On-Device COVID-19 Screening using Snapshots of Chest X-Ray.

[BibT_eX]

[DOI]

CoRR, 2020

Improve SGD Training via Aligning Mini-batches.

[BibT_eX]

[DOI]

CoRR, 2020

Robust Detection of Adversarial Attacks on Medical Images.

[BibT_eX]

[DOI]

Proceedings of the 17th IEEE International Symposium on Biomedical Imaging, 2020

Interpreting Age Effects of Human Fetal Brain from Spontaneous fMRI Using Deep 3D Convolutional Neural Networks.

[BibT_eX]

[DOI]

Proceedings of the 17th IEEE International Symposium on Biomedical Imaging, 2020

Toward Tag-free Aspect Based Sentiment Analysis: A Multiple Attention Network Approach.

[BibT_eX]

[DOI]

Proceedings of the 2020 International Joint Conference on Neural Networks, 2020

Explainable Recommendation via Interpretable Feature Mapping and Evaluation of Explainability.

[BibT_eX]

[DOI]

Proceedings of the Twenty-Ninth International Joint Conference on Artificial Intelligence, 2020

COVID-MobileXpert: On-Device COVID-19 Patient Triage and Follow-up using Chest X-rays.

[BibT_eX]

[DOI]

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2020

On the Learning Property of Logistic and Softmax Losses for Deep Neural Networks.

[BibT_eX]

[DOI]

Proceedings of the Thirty-Fourth AAAI Conference on Artificial Intelligence, 2020

2019

A Deep Active Survival Analysis approach for precision treatment recommendations: Application of prostate cancer.

[BibT_eX]

[DOI]

Expert Syst. Appl., 2019

Tackling Multiple Ordinal Regression Problems: Sparse and Deep Multi-Task Learning Approaches.

[BibT_eX]

[DOI]

Lu Wang

CoRR, 2019

Vispi: Automatic Visual Perception and Interpretation of Chest X-rays.

[BibT_eX]

[DOI]

Rui Cao

CoRR, 2019

CRCEN: A Generalized Cost-sensitive Neural Network Approach for Imbalanced Classification.

[BibT_eX]

[DOI]

CoRR, 2019

Multi-task Prediction of Patient Workload.

[BibT_eX]

[DOI]

Mohammad Hessam Olya

Kai Yang

CoRR, 2019

Prioritization of Multi-Level Risk Factors for Obesity.

[BibT_eX]

[DOI]

Proceedings of the 2019 IEEE International Conference on Bioinformatics and Biomedicine, 2019

2018

Clustering over-dispersed data with mixed feature types.

[BibT_eX]

[DOI]

Lu Wang

Stat. Anal. Data Min., 2018

Multinomial classification with class-conditional overlapping sparse feature groups.

[BibT_eX]

[DOI]

Pattern Recognit. Lett., 2018

Robust feature selection via l2, 1-norm in finite mixture of regression.

[BibT_eX]

[DOI]

Pattern Recognit. Lett., 2018

Leveraging auxiliary measures: a deep multi-task neural network for predictive modeling in clinical research.

[BibT_eX]

[DOI]

Phillip Levy

BMC Medical Informatics Decis. Mak., 2018

Learning and Interpreting Features to Rank: A Case Study on Age Estimation.

[BibT_eX]

[DOI]

Shixing Chen

Int. J. Multim. Data Eng. Manag., 2018

A Predictive Approach Using Deep Feature Learning for Electronic Medical Records: A Comparative Study.

[BibT_eX]

[DOI]

CoRR, 2018

Joint Energy Management and Interference Coordination With Max-Min Fairness in Ultra-Dense HetNets.

[BibT_eX]

[DOI]

IEEE Access, 2018

Joint Energy-Efficient Optimization of Downlink and Uplink with eICIC in HetNet.

[BibT_eX]

[DOI]

Proceedings of the IoT as a Service - 4th EAI International Conference, 2018

Proteus: network-aware web browsing on heterogeneous mobile systems.

[BibT_eX]

[DOI]

Proceedings of the 14th International Conference on emerging Networking EXperiments and Technologies, 2018

Obesity risk factors ranking using multi-task learning.

[BibT_eX]

[DOI]

Proceedings of the 2018 IEEE EMBS International Conference on Biomedical & Health Informatics, 2018

2017

Transcriptome assembly strategies for precision medicine.

[BibT_eX]

[DOI]

Quant. Biol., 2017

Cap-seq reveals complicated miRNA transcriptional mechanisms in C. elegans and mouse.

[BibT_eX]

[DOI]

Jiao Chen

Yanni Sun

Quant. Biol., 2017

Object tracking via Dirichlet process-based appearance models.

[BibT_eX]

[DOI]

Raed Almomani

Neural Comput. Appl., 2017

Modeling Over-Dispersion for Network Data Clustering.

[BibT_eX]

[DOI]

Proceedings of the 16th IEEE International Conference on Machine Learning and Applications, 2017

SUBIC: A Supervised Bi-Clustering Approach for Precision Medicine.

[BibT_eX]

[DOI]

Proceedings of the 16th IEEE International Conference on Machine Learning and Applications, 2017

Multi-task Survival Analysis.

[BibT_eX]

[DOI]

Proceedings of the 2017 IEEE International Conference on Data Mining, 2017

SDT: A Tree Method for Detecting Patient Subgroups with Personalized Risk Factors.

[BibT_eX]

[DOI]

Proceedings of the Summit on Clinical Research Informatics, 2017

Predictive deep network with leveraging clinical measure as auxiliary task.

[BibT_eX]

[DOI]

Phillip Levy

Proceedings of the 2017 IEEE International Conference on Bioinformatics and Biomedicine, 2017

2016

Poisson-Markov Mixture Model and Parallel Algorithm for Binning Massive and Heterogenous DNA Sequencing Reads.

[BibT_eX]

[DOI]

Proceedings of the Bioinformatics Research and Applications - 12th International Symposium, 2016

A Bayesian hierarchical appearance model for robust object tracking.

[BibT_eX]

[DOI]

Raed Almomani

Proceedings of the IEEE International Conference on Multimedia and Expo, 2016

SAFS: A deep feature selection approach for precision medicine.

[BibT_eX]

[DOI]

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2016

Text Classification with Topic-based Word Embedding and Convolutional Neural Networks.

[BibT_eX]

[DOI]

April Idalski Carcone

Sylvie Naar-King

Proceedings of the 7th ACM International Conference on Bioinformatics, 2016

Gene-set-based inference of biological network topologies from big molecular profiling data.

[BibT_eX]

[DOI]

Proceedings of the Big Data over Networks, 2016

2015

Knowledge Discovery Using Big Data in Biomedical Systems.

[BibT_eX]

[DOI]

IEEE ACM Trans. Comput. Biol. Bioinform., 2015

Network inference through synergistic subnetwork evolution.

[BibT_eX]

[DOI]

Robert G. Reynolds

EURASIP J. Bioinform. Syst. Biol., 2015

2014

dSpliceType: A Multivariate Model for Detecting Various Types of Differential Splicing Events Using RNA-Seq.

[BibT_eX]

[DOI]

Proceedings of the Bioinformatics Research and Applications - 10th International Symposium, 2014

GSCA: Reconstructing biological pathway topologies using a cultural algorithms approach.

[BibT_eX]

[DOI]

Proceedings of the IEEE Congress on Evolutionary Computation, 2014

A novel semi-supervised learning approach to analyzing metagenomic reads.

[BibT_eX]

[DOI]

Yuliang Geng

Xue-wen Chen

Proceedings of the 5th ACM Conference on Bioinformatics, 2014

2013

SPATA: A Seeding and Patching Algorithm for Hybrid Transcriptome Assembly.

[BibT_eX]

[DOI]

Zhiyu Zhao

CoRR, 2013

MarkovBin: An Algorithm to Cluster Metagenomic Reads Using a Mixture Modeling of Hierarchical Distributions.

[BibT_eX]

[DOI]

Proceedings of the ACM Conference on Bioinformatics, 2013

Gene Set Cultural Algorithm: A Cultural Algorithm Approach to Reconstruct Networks from Gene Sets.

[BibT_eX]

[DOI]

Proceedings of the ACM Conference on Bioinformatics, 2013

RNA-Seq analyses to reveal the human transcriptome landscape.

[BibT_eX]

[DOI]

Proceedings of the ACM Conference on Bioinformatics, 2013

Detecting various types of differential splicing events using RNA-Seq data.

[BibT_eX]

[DOI]

Proceedings of the ACM Conference on Bioinformatics, 2013

2012

GSGS: A Computational Approach to Reconstruct Signaling Pathway Structures from Gene Sets.

[BibT_eX]

[DOI]

IEEE ACM Trans. Comput. Biol. Bioinform., 2012

SASeq: A Selective and Adaptive Shrinkage Approach to Detect and Quantify Active Transcripts using RNA-Seq

[BibT_eX]

[DOI]

CoRR, 2012

Optimal structural inference of signaling pathways from unordered and overlapping gene sets.

[BibT_eX]

[DOI]

Bioinform., 2012

QSEA for fuzzy subgraph querying of KEGG pathways.

[BibT_eX]

[DOI]

Thair Judeh

Proceedings of the ACM International Conference on Bioinformatics, 2012

2011

A Generalized Multivariate Approach to Pattern Discovery from Replicated and Incomplete Genome-Wide Measurements.

[BibT_eX]

[DOI]

Hui Zhang

IEEE ACM Trans. Comput. Biol. Bioinform., 2011

SAMMate: a GUI tool for processing short read alignments in SAM/BAM format.

[BibT_eX]

[DOI]

Source Code Biol. Medicine, 2011

SPATA: A seeding and patching algorithm for de novo transcriptome assembly.

[BibT_eX]

[DOI]

Zhiyu Zhao

Kristen Marie Johnson

Proceedings of the 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2011

SPATA: A highly accurate GUI tool for de novo transcriptome assembly.

[BibT_eX]

[DOI]

Zhiyu Zhao

Proceedings of the 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2011

iQuant: A fast yet accurate GUI tool for transcript quantification.

[BibT_eX]

[DOI]

Proceedings of the 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2011

2010

Improved Bayesian Network inference using relaxed gene ordering.

[BibT_eX]

[DOI]

Hua Li

Int. J. Data Min. Bioinform., 2010

svdPPCS: an effective singular value decomposition-based method for conserved and divergent co-expression gene module identification.

[BibT_eX]

[DOI]

BMC Bioinform., 2010

2009

Breaking the computational barrier: a divide-conquer and aggregate based approach for Alu insertion site characterisation.

[BibT_eX]

[DOI]

Int. J. Comput. Biol. Drug Des., 2009

Semi-supervised gene shaving method for predicting low variation biological pathways from genome-wide data.

[BibT_eX]

[DOI]

BMC Bioinform., 2009

Estimating an Optimal Correlation Structure from Replicated Molecular Profiling Data Using Finite Mixture Models.

[BibT_eX]

[DOI]

Proceedings of the International Conference on Machine Learning and Applications, 2009

A Generalized Multivariate Approach for Correlation-Based Pattern Discovery from Replicated Molecular Profiling Data.

[BibT_eX]

[DOI]

Guorong Xu

Proceedings of the 2009 IEEE International Conference on Bioinformatics and Biomedicine, 2009

2007

Bayesian Hierarchical Model for Large-Scale Covariance Matrix Estimation.

[BibT_eX]

[DOI]

Alfred O. Hero III

J. Comput. Biol., 2007

Multivariate correlation estimator for inferring functional relationships from replicated genome-wide data.

[BibT_eX]

[DOI]

Youjuan Li

Hua Li

Bioinform., 2007

Improvement of Bayesian Network Inference Using a Relaxed Gene Ordering.

[BibT_eX]

[DOI]

Hua Li

Proceedings of the Sixth International Conference on Machine Learning and Applications, 2007

2005

High Throughput Screening of Co-Expressed Gene Pairs with Controlled False Discovery Rate (FDR) and Minimum Acceptable Strength (MAS).

[BibT_eX]

[DOI]

J. Comput. Biol., 2005

Structural comparison of metabolic networks in selected single cell organisms.

[BibT_eX]

[DOI]

Zhaohui S. Qin

BMC Bioinform., 2005

Network constrained clustering for gene microarray data.

[BibT_eX]

[DOI]

Bioinform., 2005

Network constrained clustering for gene microarray data.

[BibT_eX]

[DOI]

Alfred O. Hero III

Proceedings of the 2005 IEEE International Conference on Acoustics, 2005

Gene coexpression network discovery with controlled statistical and biological significance.

[BibT_eX]

[DOI]