Yanni Sun
Orcid: 0000-0003-1373-8023Affiliations:
- City University of Hong Kong, Department of Electrical Engineering
- Michigan State University, East Lansing, MI, USA (former)
According to our database1,
Yanni Sun
authored at least 54 papers
between 2005 and 2023.
Collaborative distances:
Collaborative distances:
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Bibliography
2023
GDmicro: classifying host disease status with GCN and deep adaptation network based on the human gut microbiome data.
Bioinform., December, 2023
Briefings Bioinform., September, 2023
HOTSPOT: hierarchical host prediction for assembled plasmid contigs with transformer.
Bioinform., May, 2023
AccuVIR: an ACCUrate VIRal genome assembly tool for third-generation sequencing data.
Bioinform., January, 2023
Briefings Bioinform., January, 2023
Briefings Bioinform., January, 2023
PhaVIP: Phage VIrion Protein classification based on chaos game representation and Vision Transformer.
Bioinform., 2023
Research on the Method Matching of Manufacturing Service Resources in a Cloud Manufacturing Environment.
Proceedings of the 9th International Conference on Computing and Artificial Intelligence, 2023
2022
HaploDMF: viral haplotype reconstruction from long reads via deep matrix factorization.
Bioinform., December, 2022
Briefings Bioinform., 2022
Briefings Bioinform., 2022
CHERRY: a Computational metHod for accuratE pRediction of virus-pRokarYotic interactions using a graph encoder-decoder model.
Briefings Bioinform., 2022
2021
CoRR, 2021
Bacteriophage classification for assembled contigs using graph convolutional network.
Bioinform., 2021
2020
ProDOMA: improve PROtein DOMAin classification for third-generation sequencing reads using deep learning.
CoRR, 2020
The Lung Cancer Associated MicroRNAs and Single Nucleotides Polymorphisms: a Mendelian Randomization Analysis.
Proceedings of the 42nd Annual International Conference of the IEEE Engineering in Medicine & Biology Society, 2020
2019
Improving the sensitivity of long read overlap detection using grouped short k-mer matches.
BMC Genom., 2019
GPRED-GC: a Gene PREDiction model accounting for 5 <sup>′</sup>- 3<sup>′</sup> GC gradient.
BMC Bioinform., 2019
BMC Bioinform., 2019
BMC Bioinform., 2019
2018
De novo haplotype reconstruction in viral quasispecies using paired-end read guided path finding.
Bioinform., 2018
2017
Cap-seq reveals complicated miRNA transcriptional mechanisms in C. elegans and mouse.
Quant. Biol., 2017
BMC Bioinform., 2017
2016
Application and Realization of Improved Apriori Algorism in Hadoop Simulation Platform for Mass Data Process.
Int. J. Online Eng., 2016
Int. J. Online Eng., 2016
Bioinform., 2016
2015
Bioinform., 2015
2014
A Scalable and Accurate Targeted Gene Assembly Tool (SAT-Assembler) for Next-Generation Sequencing Data.
PLoS Comput. Biol., 2014
Nucleic Acids Res., 2014
miR-PREFeR: an accurate, fast and easy-to-use plant miRNA prediction tool using small RNA-Seq data.
Bioinform., 2014
2013
Chain-RNA: A Comparative ncRNA Search Tool Based on the Two-Dimensional Chain Algorithm.
IEEE ACM Trans. Comput. Biol. Bioinform., 2013
Shape and secondary structure prediction for ncRNAs including pseudoknots based on linear SVM.
BMC Bioinform., 2013
Bioinform., 2013
Proceedings of the ACM Conference on Bioinformatics, 2013
ChainKnot: a comparative H-type pseudoknot prediction tool using multiple ab initio folding tools.
Proceedings of the ACM Conference on Bioinformatics, 2013
2012
IEEE ACM Trans. Comput. Biol. Bioinform., 2012
Genome-scale NCRNA homology search using a Hamming distance-based filtration strategy.
BMC Bioinform., 2012
MetaDomain: A Profile HMM-Based Protein Domain Classification Tool for Short Sequences.
Proceedings of the Biocomputing 2012: Proceedings of the Pacific Symposium, 2012
PseudoDomain: identification of processed pseudogenes based on protein domain classification.
Proceedings of the ACM International Conference on Bioinformatics, 2012
2011
J. Bioinform. Comput. Biol., 2011
HMM-FRAME: accurate protein domain classification for metagenomic sequences in the presence of frameshift errors.
BMC Bioinform., 2011
Proceedings of the ACM International Conference on Bioinformatics, 2011
2010
Proceedings of the 10th IEEE International Conference on Bioinformatics and Bioengineering, 2010
2009
IEEE ACM Trans. Comput. Biol. Bioinform., 2009
2007
2006
BMC Bioinform., 2006
2005
J. Comput. Biol., 2005